AMPDB_96 | Lysozyme C
PEPTIDE SUMMARY
Lysozyme C
1 General Description
AMPDB ID: AMPDB_96
Protein Names: Lysozyme C (EC 3.2.1.17) (1;4-beta-N-acetylmuramidase C) (Allergen Gal d IV) (allergen Gal d 4)
Protein Family: Glycosyl hydrolase 22 family
Gene Name: LYZ
Source Organism: Gallus gallus (Chicken)
Protein Length: 147 AA
Protein Existence: Evidence at protein level
2 Protein Sequence & Composition
2.1 Sequence
MRSLLILVLCFLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
FASTA format
2.2 Composition
Counts of Amino Acids
'A': 14, 'R': 12, 'N': 14, 'D': 7, 'C': 9, 'Q': 3, 'E': 2, 'G': 13, 'H': 1, 'I': 7, 'L': 15, 'K': 6, 'M': 3, 'F': 4, 'P': 3, 'S': 11, 'T': 7, 'W': 6, 'Y': 3, 'V': 7
Frequencies of Amino Acids
'A': 9.52%, 'R': 8.16%, 'N': 9.52%, 'D': 4.76%, 'C': 6.12%, 'Q': 2.04%, 'E': 1.36%, 'G': 8.84%, 'H': 0.68%, 'I': 4.76%, 'L': 10.2%, 'K': 4.08%, 'M': 2.04%, 'F': 2.72%, 'P': 2.04%, 'S': 7.48%, 'T': 4.76%, 'W': 4.08%, 'Y': 2.04%, 'V': 4.76%
Missing Amino Acid(s)
No Amino Acid(s) are missing in this protein
Most Occurring Amino Acid(s)
L
Less Occurring Amino Acid(s)
H
Hydrophobic Amino Acid(s) Count
72
Hydrophilic Amino Acid(s) Count
75
Basic Amino Acid(s) Count
9
Acidic Amino Acid(s) Count
19
Modified Amino Acid(s) Count
0
Modified Amino Acid(s) Frequencies
0
Computed by biopython (version 1.79) & proteinAnalysis (version 1)
3 Physicochemical Properties
Sl. No. Properties Values Reference
1. Molecular Mass 16238.6 Da Computed by ProtParam module (biopython 1.79)
2. Aliphatic Index 81.701 Computed by ProtParam module (biopython 1.79)
3. Instability Index (Half Life) 19.865 Computed by ProtParam module (biopython 1.79)
4. Hydrophobicity (GRAVY) -0.15 Computed by ProtParam module (biopython 1.79)
5. Hydrophobic Moment 0.556 Computed by ProtParam module (biopython 1.79)
6. Isoelectric Point 9.25 Computed by ProtParam module (biopython 1.79)
7. Charge (at pH 7) 8.533 Computed by ProtParam module (biopython 1.79)
8. Secondary Structure Fraction 0.286, 0.279, 0.231 [Helix, Turn, Sheet] Computed by ProtParam module (biopython 1.79)
9. Aromaticity 0.088 Computed by ProtParam module (biopython 1.79)
10. Molar Extinction Coefficient (cysteine|cystine) 37470, 37970 Computed by ProtParam module (biopython 1.79)
4 Activity Details
4.1 Target Organism(s)
No Target Organism Found
4.2 Antimicrobial Activity
Antimicrobial, Bacteriolytic enzyme
4.3 Enzymatic Activity
Glycosidase, Hydrolase
4.4 Inhibitory Effect
Not found
4.5 Other Biological Activity
Non-hemolytic, Non-ribosomal
Activity data manually curated from Literature and UniProt
5 Database Cross-references
5.1 Literature Database
5.1.1 PubMed
Citation 1: Jung A, Sippel AE, Grez M, et al. Exons encode functional and structural units of chicken lysozyme. Proc Natl Acad Sci U S A. 1980;77(10):5759-63. Published 1980 Oct. doi:10.1073/pnas.77.10.5759
PMID: 6934509
Citation 2: Chong S, Riggs AD, Bonifer C, et al. The chicken lysozyme chromatin domain contains a second, widely expressed gene. Nucleic Acids Res. 2002;30(2):463-7. Published 2002 Jan 15. doi:10.1093/nar/30.2.463
PMID: 11788708
Citation 3: International Chicken Genome Sequencing Consortium. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature. 2004;432(7018):695-716. Published 2004 Dec 9. doi:10.1038/nature03154
PMID: 15592404
Citation 4: Downing T, O'Farrelly C, Bhuiyan AK, et al. Variation in chicken populations may affect the enzymatic activity of lysozyme. Anim Genet. 2010;41(2):213-7. Published 2010 Apr. doi:10.1111/j.1365-2052.2009.01974.x
PMID: 19845599
Citation 5: Palmiter RD, Gagnon J, Ericsson LH, et al. Precursor of egg white lysozyme. Amino acid sequence of an NH2-terminal extension. J Biol Chem. 1977;252(18):6386-93. Published 1977 Sep 25. doi:
PMID: 893412
Citation 6: CANFIELD RE, CANFIELD RE. THE AMINO ACID SEQUENCE OF EGG WHITE LYSOZYME. J Biol Chem. 1963;238:2698-707. Published 1963 Aug. doi:
PMID: 14063294
Citation 7: Buell GN, Wickens MP, Carbon J, et al. Isolation of recombinant plasmids bearing cDNA to hen ovomucoid and lysozyme mRNAs. J Biol Chem. 1979;254(18):9277-83. Published 1979 Sep 25. doi:
PMID: 383714
Citation 8: CANFIELD RE, LIU AK, LIU AK. THE DISULFIDE BONDS OF EGG WHITE LYSOZYME (MURAMIDASE). J Biol Chem. 1965;240:1997-2002. Published 1965 May. doi:
PMID: 14301784
Citation 9: Jaureguiàdell J, Jollès J, Jollès P, et al. The disulfide bridges of hen's egg-white lysozyme. Biochim Biophys Acta. 1965;107(1):97-111. Published 1965 Aug 24. doi:
PMID: 5857373
Citation 10: Kumagai I, Kojima S, Tamaki E, et al. Conversion of Trp 62 of hen egg-white lysozyme to Tyr by site-directed mutagenesis. J Biochem. 1987;102(4):733-40. Published 1987 Oct. doi:10.1093/oxfordjournals.jbchem.a122111
PMID: 3325501
Citation 11: Maehashi K, Matano M, Irisawa T, et al. Molecular characterization of goose- and chicken-type lysozymes in emu (Dromaius novaehollandiae): evidence for extremely low lysozyme levels in emu egg white. Gene. 2012;492(1):244-9. Published 2012 Jan 15. doi:10.1016/j.gene.2011.10.021
PMID: 22044478
Citation 12: Blake CC, Koenig DF, Mair GA, et al. Structure of hen egg-white lysozyme. A three-dimensional Fourier synthesis at 2 Angstrom resolution. Nature. 1965;206(4986):757-61. Published 1965 May 22. doi:10.1038/206757a0
PMID: 5891407
Citation 13: Moult J, Yonath A, Traub W, et al. The structure of triclinic lysozyme at 2-5 A resolution. J Mol Biol. 1976;100(2):179-95. Published 1976 Jan 15. doi:10.1016/s0022-2836(76)80147-7
PMID: 1255711
Citation 14: Kurachi K, Sieker LC, Jensen LH, et al. Structures of triclinic mono- and di-N-acetylglucosamine: lysozyme complexes--a crystallographic study. J Mol Biol. 1976;101(1):11-24. Published 1976 Feb 15. doi:10.1016/0022-2836(76)90063-2
PMID: 1255720
Citation 15: Fischmann TO, Bentley GA, Bhat TN, et al. Crystallographic refinement of the three-dimensional structure of the FabD1.3-lysozyme complex at 2.5-A resolution. J Biol Chem. 1991;266(20):12915-20. Published 1991 Jul 15. doi:
PMID: 1712773
Citation 16: Redfield C, Dobson CM, Dobson CM. Sequential 1H NMR assignments and secondary structure of hen egg white lysozyme in solution. Biochemistry. 1988;27(1):122-36. Published 1988 Jan 12. doi:10.1021/bi00401a020
PMID: 3349024
Citation 17: Schwalbe H, Fiebig KM, Buck M, et al. Structural and dynamical properties of a denatured protein. Heteronuclear 3D NMR experiments and theoretical simulations of lysozyme in 8 M urea. Biochemistry. 1997;36(29):8977-91. Published 1997 Jul 22. doi:10.1021/bi970049q
PMID: 9220986
5.2 Protein Sequence Databases
UniProt: P00698
5.3 3D Structure Databases
Sl. no. PDB ID Method Resolution Access Links 3D View
AlphaFoldDB: P00698
5.4 Nucleotide Sequence Databases
Sl. no. Accession(s) Access Link(s)
1. J00885 GenBank || EMBL
2. V00428 GenBank || EMBL
3. AF410481 GenBank || EMBL
4. M10640 GenBank || EMBL
5. FJ542373 GenBank || EMBL
6. FJ542374 GenBank || EMBL
7. FJ542375 GenBank || EMBL
8. FJ542376 GenBank || EMBL
9. FJ542377 GenBank || EMBL
10. FJ542378 GenBank || EMBL
11. FJ542379 GenBank || EMBL
12. FJ542380 GenBank || EMBL
13. FJ542381 GenBank || EMBL
14. FJ542382 GenBank || EMBL
15. FJ542383 GenBank || EMBL
16. FJ542384 GenBank || EMBL
17. FJ542385 GenBank || EMBL
18. FJ542386 GenBank || EMBL
19. FJ542387 GenBank || EMBL
20. FJ542388 GenBank || EMBL
21. FJ542389 GenBank || EMBL
22. FJ542390 GenBank || EMBL
23. FJ542391 GenBank || EMBL
24. FJ542392 GenBank || EMBL
25. FJ542393 GenBank || EMBL
26. FJ542394 GenBank || EMBL
27. FJ542395 GenBank || EMBL
28. FJ542396 GenBank || EMBL
29. FJ542397 GenBank || EMBL
30. FJ542398 GenBank || EMBL
31. FJ542399 GenBank || EMBL
32. FJ542400 GenBank || EMBL
33. FJ542401 GenBank || EMBL
34. FJ542402 GenBank || EMBL
35. FJ542403 GenBank || EMBL
36. FJ542404 GenBank || EMBL
37. FJ542405 GenBank || EMBL
38. FJ542406 GenBank || EMBL
39. FJ542407 GenBank || EMBL
40. FJ542408 GenBank || EMBL
41. FJ542409 GenBank || EMBL
42. FJ542410 GenBank || EMBL
43. FJ542411 GenBank || EMBL
44. FJ542412 GenBank || EMBL
45. FJ542413 GenBank || EMBL
46. FJ542414 GenBank || EMBL
47. FJ542415 GenBank || EMBL
48. FJ542416 GenBank || EMBL
49. FJ542417 GenBank || EMBL
50. FJ542418 GenBank || EMBL
51. FJ542419 GenBank || EMBL
52. FJ542420 GenBank || EMBL
53. FJ542421 GenBank || EMBL
54. FJ542422 GenBank || EMBL
55. FJ542423 GenBank || EMBL
56. FJ542424 GenBank || EMBL
57. FJ542425 GenBank || EMBL
58. FJ542426 GenBank || EMBL
59. FJ542427 GenBank || EMBL
60. FJ542428 GenBank || EMBL
61. FJ542429 GenBank || EMBL
62. FJ542430 GenBank || EMBL
63. FJ542431 GenBank || EMBL
64. FJ542432 GenBank || EMBL
65. FJ542433 GenBank || EMBL
66. FJ542434 GenBank || EMBL
67. FJ542435 GenBank || EMBL
68. FJ542436 GenBank || EMBL
69. FJ542437 GenBank || EMBL
70. FJ542438 GenBank || EMBL
71. FJ542439 GenBank || EMBL
72. FJ542440 GenBank || EMBL
73. FJ542441 GenBank || EMBL
74. FJ542442 GenBank || EMBL
75. FJ542443 GenBank || EMBL
76. FJ542444 GenBank || EMBL
77. FJ542445 GenBank || EMBL
78. FJ542446 GenBank || EMBL
79. FJ542447 GenBank || EMBL
80. FJ542448 GenBank || EMBL
81. FJ542449 GenBank || EMBL
82. FJ542450 GenBank || EMBL
83. FJ542451 GenBank || EMBL
84. FJ542452 GenBank || EMBL
85. FJ542453 GenBank || EMBL
86. FJ542454 GenBank || EMBL
87. FJ542455 GenBank || EMBL
88. FJ542456 GenBank || EMBL
89. FJ542457 GenBank || EMBL
90. FJ542458 GenBank || EMBL
91. FJ542459 GenBank || EMBL
92. FJ542460 GenBank || EMBL
93. FJ542461 GenBank || EMBL
94. FJ542462 GenBank || EMBL
95. FJ542463 GenBank || EMBL
96. FJ542464 GenBank || EMBL
97. FJ542465 GenBank || EMBL
98. FJ542466 GenBank || EMBL
99. FJ542467 GenBank || EMBL
100. FJ542468 GenBank || EMBL
101. FJ542469 GenBank || EMBL
102. FJ542470 GenBank || EMBL
103. FJ542471 GenBank || EMBL
104. FJ542472 GenBank || EMBL
105. FJ542473 GenBank || EMBL
106. FJ542474 GenBank || EMBL
107. FJ542475 GenBank || EMBL
108. FJ542476 GenBank || EMBL
109. FJ542477 GenBank || EMBL
110. FJ542478 GenBank || EMBL
111. FJ542479 GenBank || EMBL
112. FJ542480 GenBank || EMBL
113. FJ542481 GenBank || EMBL
114. FJ542482 GenBank || EMBL
115. FJ542483 GenBank || EMBL
116. FJ542484 GenBank || EMBL
117. FJ542485 GenBank || EMBL
118. FJ542486 GenBank || EMBL
119. FJ542487 GenBank || EMBL
120. FJ542488 GenBank || EMBL
121. FJ542489 GenBank || EMBL
122. FJ542490 GenBank || EMBL
123. FJ542491 GenBank || EMBL
124. FJ542492 GenBank || EMBL
125. FJ542493 GenBank || EMBL
126. FJ542494 GenBank || EMBL
127. FJ542495 GenBank || EMBL
128. FJ542496 GenBank || EMBL
129. FJ542497 GenBank || EMBL
130. FJ542498 GenBank || EMBL
131. FJ542499 GenBank || EMBL
132. FJ542500 GenBank || EMBL
133. FJ542501 GenBank || EMBL
134. FJ542502 GenBank || EMBL
135. FJ542503 GenBank || EMBL
136. FJ542504 GenBank || EMBL
137. FJ542505 GenBank || EMBL
138. FJ542506 GenBank || EMBL
139. FJ542507 GenBank || EMBL
140. FJ542508 GenBank || EMBL
141. FJ542509 GenBank || EMBL
142. FJ542510 GenBank || EMBL
143. FJ542511 GenBank || EMBL
144. FJ542512 GenBank || EMBL
145. FJ542513 GenBank || EMBL
146. FJ542514 GenBank || EMBL
147. FJ542515 GenBank || EMBL
148. FJ542516 GenBank || EMBL
149. FJ542517 GenBank || EMBL
150. FJ542518 GenBank || EMBL
151. FJ542519 GenBank || EMBL
152. FJ542520 GenBank || EMBL
153. FJ542521 GenBank || EMBL
154. FJ542522 GenBank || EMBL
155. FJ542523 GenBank || EMBL
156. FJ542524 GenBank || EMBL
157. FJ542525 GenBank || EMBL
158. FJ542526 GenBank || EMBL
159. FJ542527 GenBank || EMBL
160. FJ542528 GenBank || EMBL
161. FJ542529 GenBank || EMBL
162. FJ542530 GenBank || EMBL
163. FJ542531 GenBank || EMBL
164. FJ542532 GenBank || EMBL
165. FJ542533 GenBank || EMBL
166. FJ542534 GenBank || EMBL
167. FJ542535 GenBank || EMBL
168. FJ542536 GenBank || EMBL
169. FJ542537 GenBank || EMBL
170. FJ542538 GenBank || EMBL
171. FJ542539 GenBank || EMBL
172. FJ542541 GenBank || EMBL
173. FJ542540 GenBank || EMBL
174. FJ542542 GenBank || EMBL
175. FJ542543 GenBank || EMBL
176. FJ542544 GenBank || EMBL
177. FJ542545 GenBank || EMBL
178. FJ542546 GenBank || EMBL
179. FJ542547 GenBank || EMBL
180. FJ542548 GenBank || EMBL
181. FJ542549 GenBank || EMBL
182. FJ542550 GenBank || EMBL
183. FJ542551 GenBank || EMBL
184. FJ542552 GenBank || EMBL
185. FJ542563 GenBank || EMBL
186. FJ542564 GenBank || EMBL
187. KU933268 GenBank || EMBL
188. KU933267 GenBank || EMBL
189. AADN05000096 GenBank || EMBL
CCDS: Not found
RefSeq: NP_990612.1
5.5 Protein-Protein Interaction Databases
IntAct: P00698
MINT: P00698
BioGRID: 676478
5.6 Ligand Databases
BindingDB: P00698
DrugBank: Not found
5.7 Family & Domain Databases
PROSITE: PS00128, PS51348
5.8 Genome Annotation Databases
5.9 Phylogenomic Databases
5.10 Enzyme & Pathway Databases
BRENDA: 3.2.1.17
BioCyc: Not found
5.11 Protein-RNA Interaction Databases
RNAct: Not found




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