AMPDB Specific Search
Facility
This is a specific search facility (the
search can also be restricted by clicking on 'Choose
a Dataset' option). This
search facility returns those entries which are exactly match with the
search term. This search facility is case insensitive.
Here one can search with followings.
1. AMPDB ID (e.g., AMPDB_101)
2. AMP from a Organism (e.g.,
Drosophila melanogaster (Fruit fly))
3. AMP name (e.g., Defensin)
4. Gene name of any AMP (e.g.,
LBP)
5. AMP Sequence (e.g.,
'MKLSTSLLAIVAVA')
Note:
This is not BLAST search
6. Existence level of a
protein (e.g., Inferred from homology)
7. Target-organism (e.g.,
E.coli)
Note:
"Search by Target Organism"
search facility can also be use for more refine target organism
search.
8. Antimicrobial activity of
an AMP (e.g., Fungicide)
9. Enzymatic activity of an
AMP (e.g., Protease)
10. Inhibitory activity of an
AMP (e.g., Protease inhibitor)
11. Other biological activity
(e.g., Cytokine)
Note:
"Search by
Activity" search facility can also be use for more refine 8 to 11
related search.
12. PubMed ID (e.g., 25342741)
13. PDB ID (e.g., 2MN5)
14. IntAct ID (e.g., O16829)
15. STRING ID (e.g.,
9606.ENSP00000249330)
16. MINT ID (e.g., O60814)
17. DIP ID (e.g., DIP-26293N)
18. BioGRID ID (e.g., 124439)
19. BindingDB ID (e.g.,
P00697)
20. ChEMBL ID (e.g.,
CHEMBL2297)
21. DrugBank ID(e.g., DB06934)
22. GeneID (e.g., 1258585)
23. KEGG ID (e.g., vg:1258585)
24. Ensembl (e.g.,
ENSMGAT00000011853)
25. GeneTree ID (e.g.,
ENSGT00940000153832)
26. BRENDA ID (e.g., 3.2.1.17)
27. BioCyc ID (e.g.,
ARA:AT3G12500-MON)
28. RNAct ID (e.g., P20160)
29. PANTHER ID (e.g.,
PTHR10206)
30. PROSITE ID (e.g., PS00946)
31. InterPro ID (e.g.,
IPR018216)
32. EMBL ID (e.g., Y09471)
33. GenBank ID (e.g.,
BC142014)
34. CCDS ID (e.g.,
CCDS12044.1)
35. RefSeq ID (e.g.,
NP_001691.1)
36. UniProt ID (e.g., P19171)
Note:
"Advanced Search"
facility can also be use for more refine 12 to 36 related
search..
37. Taxonomy lineage (e.g., Plant)
(e.g., )