AMPDB Text Search
Facility
This is a generelized search facility (the
search can also be restricted by clicking on 'Choose
a Dataset' option). This
search facility is case insensitive.
Here one can search with followings.
1. AMPDB ID (e.g., AMPDB_101)
2. AMP from a Organism (e.g.,
Papio anubis)
3. AMP name (e.g., Defensin)
4. Gene name of any AMP (e.g.,
LBP)
5. AMP Sequence (e.g.,
'MKLSTSLLAIVAVA')
Note:
This is not BLAST search
6. Existence level of a
protein (e.g., Inferred from homology)
7. Target-organism (e.g.,
E.coli)
Note:
For more specific target-organism search "Search by Target Organism"
search facility is recomended.
8. Antimicrobial activity of
an AMP (e.g., Fungicide)
9. Enzymatic activity of an
AMP (e.g., Protease)
10. Inhibitory activity of an
AMP (e.g., Protease inhibitor)
11. Other biological activity
(e.g., Cytokine)
Note:
For perform more specific 8 to 11 related search "Search by
Activity" search facility is recomended.
12. PubMed ID (e.g., 25342741)
13. PDB ID (e.g., 2MN5)
14. IntAct ID (e.g., O16829)
15. STRING ID (e.g.,
9606.ENSP00000249330)
16. MINT ID (e.g., O60814)
17. DIP ID (e.g., DIP-26293N)
18. BioGRID ID (e.g., 124439)
19. BindingDB ID (e.g.,
P00697)
20. ChEMBL ID (e.g.,
CHEMBL2297)
21. DrugBank ID(e.g., DB06934)
22. GeneID (e.g., 1258585)
23. KEGG ID (e.g., vg:1258585)
24. Ensembl (e.g.,
ENSMGAT00000011853)
25. GeneTree ID (e.g.,
ENSGT00940000153832)
26. BRENDA ID (e.g., 3.2.1.17)
27. BioCyc ID (e.g.,
ARA:AT3G12500-MON)
28. RNAct ID (e.g., P20160)
29. PANTHER ID (e.g.,
PTHR10206)
30. PROSITE ID (e.g., PS00946)
31. InterPro ID (e.g.,
IPR018216)
32. EMBL ID (e.g., Y09471)
33. GenBank ID (e.g.,
BC142014)
34. CCDS ID (e.g.,
CCDS12044.1)
35. RefSeq ID (e.g.,
NP_001691.1)
36. UniProt ID (e.g., P19171)
Note:
For perform more specific 12 to 36 related search "Advanced Search"
facility is recomended.
37. Taxonomy lineage (e.g., Plant)
(e.g., )