AMPDB_903 | Seed lectin beta chain

PEPTIDE SUMMARY

Seed lectin beta chain

1 General Description

AMPDB ID: AMPDB_903

Protein Names: Seed lectin beta chain

Protein Family: Leguminous lectin family

Gene Name: Nil

Source Organism: Spatholobus parviflorus (Butea parviflora)

Protein Length: 239 AA

Protein Existence: Evidence at protein level

2 Protein Sequence & Composition

2.1 Sequence

AEETSFVFSKFKPLEPNLILQGDALVTVAGVLQLTNVDSNGVPEPSSLGRATYSAPINIWDSATGLVASFATSFRFTIYAPNIATIADGLAFFLAPVASAPDSGGGFLGLFDSAVGDTTYQTVAVEFDTYENTVFTDPPYTHIGFDVNSISSIKTVKWSLANGEAAKVLITYNSAVKLLVASLVYPSSKTSFILADIVDLSSVLPEWVRVGFSAATGASKGYIETHDVFSWSFASKLAG

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 28, 'R': 3, 'N': 9, 'D': 13, 'C': 0, 'Q': 3, 'E': 9, 'G': 17, 'H': 2, 'I': 13, 'L': 21, 'K': 9, 'M': 0, 'F': 17, 'P': 12, 'S': 28, 'T': 20, 'W': 4, 'Y': 8, 'V': 23

Frequencies of Amino Acids

'A': 11.72%, 'R': 1.26%, 'N': 3.77%, 'D': 5.44%, 'C': 0%, 'Q': 1.26%, 'E': 3.77%, 'G': 7.11%, 'H': 0.84%, 'I': 5.44%, 'L': 8.79%, 'K': 3.77%, 'M': 0%, 'F': 7.11%, 'P': 5.02%, 'S': 11.72%, 'T': 8.37%, 'W': 1.67%, 'Y': 3.35%, 'V': 9.62%

Missing Amino Acid(s)

C, M

Most Occurring Amino Acid(s)

A, S

Less Occurring Amino Acid(s)

Hydrophobic Amino Acid(s) Count

135

Hydrophilic Amino Acid(s) Count

104

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	25249.5 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	95.105	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	30.804	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	0.345	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.621	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	4.243	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	-9.808	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.36, 0.276, 0.243 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.121	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	33920, 33920	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

A.niger, Fusarium

4.2 Antimicrobial Activity

Antimicrobial, Fungicide

4.3 Enzymatic Activity

Not found

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Lectin, Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

No PMID found

5.2 Protein Sequence Databases

UniProt: P86353

5.3 3D Structure Databases

	Sl. no.	PDB ID	Method	Resolution	Access Links	3D View

AlphaFoldDB: P86353

5.4 Nucleotide Sequence Databases

No entries found in GenBank or EMBL

CCDS: Not found

RefSeq: Not found

5.5 Protein-Protein Interaction Databases

STRING: Not found

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR013320, IPR016363, IPR000985, IPR019825, IPR001220

PANTHER: Not found

PROSITE: PS00308, PS00307

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: Not found

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

Download