AMPDB_58636 | Carocin S3K

PEPTIDE SUMMARY

Carocin S3K

1 General Description

AMPDB ID: AMPDB_58636

Protein Names: Carocin S3K

Protein Family: Nil

Gene Name: Nil

Source Organism: Pectobacterium carotovorum subsp. carotovorum (Erwinia carotovora subsp. carotovora)

Protein Length: 879 AA

Protein Existence: Predicted

2 Protein Sequence & Composition

2.1 Sequence

MIKYRLYAPNDGDTMTVDGGGGWDSPVNDDRKGGNDRDNGKGGSAVDYGKNPEKQTVINPYLFFAIPPAVYLIDDVWGFTFNTAAIEVGLKKVADFALKATPVAGRLVGILGAIMPSDIAPDSIDPVFNGMQQTKMAQMAAQLAAQKGVPNIGYSVTAMPADLVSSLPVSEISSLPTAPASLLAQSVINTELSRRQLTLTKPAVNAPVANIPVVKAEKTAVPGVYSVKVIADKPALQIKLDKTQPALAKNPPKVKDDVQVSSFLSSPVADTHHAFIDFGSDHEPVYVSLSKIVTAEEEKKQVEEAKRREQEWLLRHPVAAAERKVQDAINAEAEAERGVKSAELALNNLKTSPNGLTLADPVKYPAKAEWPEIYDVPEYGDYAQIKFNFSVLVDSVAKLNALLTQGAGALLTDEISWRDVITKYSVNNLSQDMLNDPSETMFVLGDVYKEQALEYYGYLRSELLKSKELISNAEKSLIIAIESRKKAEQDKKTADQKLKDEQDRKRNRVNVSTFGTVQTQLSTLLSAFYAATSGSTASISQSVPSGALASFSYKPQGMIGSGKIVGKDVDILFSIPVKDIPGYKSPTNFDDLAKKNGNLDLPIRLAFSNENGERVLRAFKAGSLRVPSSVRGVVGIYDKNTGIFSAEIDGVPSRLVLENPAFPPIGNVGNTGNTAPDYKALLNTGVDVKPVDKITVTTTPVADPVDIDDYIIWLPTASGSGVEPIYIVFNSNPYGETNSKGKYSGRSFNTDKAGGPIQSLDWKTANIDRAGVDKVKLHTGRFAESDANKVMIDRLERILKGTLAVTDTDKRFYTHEIRELERYRNLGIKDGVVPSNQGEVWNNTHTATLEDYKIDERTESLYTSEAIKASEEQDMRESK

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 82, 'R': 34, 'N': 46, 'D': 64, 'C': 0, 'Q': 28, 'E': 50, 'G': 60, 'H': 7, 'I': 51, 'L': 69, 'K': 68, 'M': 12, 'F': 25, 'P': 52, 'S': 67, 'T': 52, 'W': 8, 'Y': 30, 'V': 74

Frequencies of Amino Acids

'A': 9.33%, 'R': 3.87%, 'N': 5.23%, 'D': 7.28%, 'C': 0%, 'Q': 3.19%, 'E': 5.69%, 'G': 6.83%, 'H': 0.8%, 'I': 5.8%, 'L': 7.85%, 'K': 7.74%, 'M': 1.37%, 'F': 2.84%, 'P': 5.92%, 'S': 7.62%, 'T': 5.92%, 'W': 0.91%, 'Y': 3.41%, 'V': 8.42%

Missing Amino Acid(s)

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

Hydrophobic Amino Acid(s) Count

433

Hydrophilic Amino Acid(s) Count

446

Basic Amino Acid(s) Count

114

Acidic Amino Acid(s) Count

109

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	95609.1 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	86.985	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	33.978	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.34	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.775	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	5.302	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	-11.294	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.292, 0.256, 0.242 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.072	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	88700, 88700	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Not found

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

No PMID found

5.2 Protein Sequence Databases

UniProt: S5G4D1

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: S5G4D1

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	KC848768	GenBank \|\| EMBL

CCDS: Not found

RefSeq: Not found

5.5 Protein-Protein Interaction Databases

STRING: Not found

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR038452, IPR016128, IPR036302

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: Not found

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

Download