AMPDB_58216 | Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 3 17

PEPTIDE SUMMARY

Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 3 17

1 General Description

AMPDB ID: AMPDB_58216

Protein Names: Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 3 17

Protein Family: Nil

Gene Name: plu0884

Source Organism: Photorhabdus laumondii subsp. laumondii (strain DSM 15139 CIP 105565 TT01)

Protein Length: 557 AA

Protein Existence: Predicted

2 Protein Sequence & Composition

2.1 Sequence

MAIGYFLLVGDKTTCGGQIITGDHTMTFNGRATAREGDKVTCGKHPGSYTIVGGVSDVFDMGRKLAGTLDSVSTCPCRARFINSEMDSYEKQEQPNNRATSPVNMATQNFSSPVEEARNVQPAPPVTKEPPIPVFAKSCLRGKGCTDAGTEAEPADNFGRVAIYQVPSSPTPVTPQKPEPPPQGEKQPSEPDKPQDKKLPWYKRWFRGGEDKAEAAAAAVAATARSAVAEGETLVMRYIGGGAISAGRWLAAPNPVTVGLMGLFYSPKLNEGEEDYLDPSRLRQIAEQYGKAPTRVRFRWIRDEKSGRMTVQGYHVSPEGGLDKVPVRMMTLNRTTGNYEFWEPGEYRPTILWTPNEQEFKVPAHTGNEEQPFIPSQITVLPIPEKVGSDIESLPMPEEKDFRDYILILPVPNMPPVYVYLSKPPVKPLEVGEYQDLAGRSRNDGLDIDHIPSKAALKLFLKNKLGKAATDKDIDKILNSGVSIAIPHRVHRGYSETYKGRNTKAKQVKDASDIRVAVDSNFDAQVPGLREEGYTDDQLNKAREELHQLNKEQGWYK

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 43, 'R': 33, 'N': 22, 'D': 32, 'C': 6, 'Q': 22, 'E': 41, 'G': 47, 'H': 8, 'I': 25, 'L': 33, 'K': 38, 'M': 12, 'F': 16, 'P': 51, 'S': 30, 'T': 33, 'W': 7, 'Y': 20, 'V': 38

Frequencies of Amino Acids

'A': 7.72%, 'R': 5.92%, 'N': 3.95%, 'D': 5.75%, 'C': 1.08%, 'Q': 3.95%, 'E': 7.36%, 'G': 8.44%, 'H': 1.44%, 'I': 4.49%, 'L': 5.92%, 'K': 6.82%, 'M': 2.15%, 'F': 2.87%, 'P': 9.16%, 'S': 5.39%, 'T': 5.92%, 'W': 1.26%, 'Y': 3.59%, 'V': 6.82%

Missing Amino Acid(s)

No Amino Acid(s) are missing in this protein

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

Hydrophobic Amino Acid(s) Count

272

Hydrophilic Amino Acid(s) Count

285

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	61530.5 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	68.115	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	49.374	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.636	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.746	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	6.944	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	-1.588	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.25, 0.269, 0.232 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.077	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	68300, 68675	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Not found

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

Citation 1: Duchaud E, Rusniok C, Frangeul L, et al. The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens. Nat Biotechnol. 2003;21(11):1307-13. Published 2003 Nov. doi:10.1038/nbt886

PMID: 14528314

5.2 Protein Sequence Databases

UniProt: Q7N861

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: Q7N861

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	BX571861	GenBank \|\| EMBL

CCDS: Not found

RefSeq: WP_011145251.1

5.5 Protein-Protein Interaction Databases

STRING: 243265.plu0884

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR008727, IPR016128, IPR036302

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: plu:plu0884

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: PLUM243265:PLU_RS04405-MON

5.11 Protein-RNA Interaction Databases

RNAct: Not found

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