AMPDB_58215 | Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 15 17
PEPTIDE SUMMARY
Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 15 17
1 General Description
AMPDB ID: AMPDB_58215
Protein Names: Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 15 17
Protein Family: Nil
Gene Name: plu4177
Protein Length: 553 AA
Protein Existence: Predicted
2 Protein Sequence & Composition
2.1 Sequence
MAIGYFLLVGDKTTCGGQIITGDHTMTFNGRATAREGDKVTCGKHPGTYVIVGGVSDVFDMGRKLAGTLDSVSTCPCRARFINSEMDSYEKQDKTADRVAAPTNMAQQHFSSPVKDVGSPPATQVPPPPIPVFTKSCQRGKGCTDAGTEPESANNFGRMAIYQVPSSPAPATAQKPEPPPQDKKHPPEPGKPRDKKLPWYKRWFRSGKDNAEAAATAVAATTRSAVAEGETLVMRYIGGGAISAGRWLAAPNPVTVGLMGLFYSPSLNQGEEDYLDPYRLRQIAEQYGKAPTRVRFRWIRDEKSGRMTVQGYHVSPESGLDKVPVCMMTLNRTTGNYEFWEPGETRPTILWTPNEQEFKAPAHTGNEEQPFIPSQITVLPIPDKVGSDIESLPMPEEKDFRDYILVFPIPNMPPVYVYLSKPPVKLFEVDLYRNFAGRLRNGTHADHMPSAAAVRAKLKMLYPDLEMDELSLIEKNVAAIIIPAKVHQKFSATYGGRNSQTQIEQDSKDLRAAVERDFSTIEPELRNYGATKAQLENARAKIHRLNQEQGLYK
FASTA format
2.2 Composition
Counts of Amino Acids
'A': 49, 'R': 34, 'N': 20, 'D': 29, 'C': 7, 'Q': 23, 'E': 35, 'G': 42, 'H': 10, 'I': 25, 'L': 32, 'K': 34, 'M': 16, 'F': 19, 'P': 51, 'S': 30, 'T': 37, 'W': 6, 'Y': 20, 'V': 34
Frequencies of Amino Acids
'A': 8.86%, 'R': 6.15%, 'N': 3.62%, 'D': 5.24%, 'C': 1.27%, 'Q': 4.16%, 'E': 6.33%, 'G': 7.59%, 'H': 1.81%, 'I': 4.52%, 'L': 5.79%, 'K': 6.15%, 'M': 2.89%, 'F': 3.44%, 'P': 9.22%, 'S': 5.42%, 'T': 6.69%, 'W': 1.08%, 'Y': 3.62%, 'V': 6.15%
Missing Amino Acid(s)
No Amino Acid(s) are missing in this protein
Most Occurring Amino Acid(s)
P
Less Occurring Amino Acid(s)
W
Hydrophobic Amino Acid(s) Count
274
Hydrophilic Amino Acid(s) Count
279
Basic Amino Acid(s) Count
64
Acidic Amino Acid(s) Count
78
Modified Amino Acid(s) Count
0
Modified Amino Acid(s) Frequencies
0
Computed by biopython (version 1.79) & proteinAnalysis (version 1)
3 Physicochemical Properties
Sl. No. Properties Values Reference
1. Molecular Mass 61147.4 Da Computed by ProtParam module (biopython 1.79)
2. Aliphatic Index 66.89 Computed by ProtParam module (biopython 1.79)
3. Instability Index (Half Life) 47.421 Computed by ProtParam module (biopython 1.79)
4. Hydrophobicity (GRAVY) -0.553 Computed by ProtParam module (biopython 1.79)
5. Hydrophobic Moment 0.769 Computed by ProtParam module (biopython 1.79)
6. Isoelectric Point 8.419 Computed by ProtParam module (biopython 1.79)
7. Charge (at pH 7) 4.521 Computed by ProtParam module (biopython 1.79)
8. Secondary Structure Fraction 0.246, 0.259, 0.239 [Helix, Turn, Sheet] Computed by ProtParam module (biopython 1.79)
9. Aromaticity 0.081 Computed by ProtParam module (biopython 1.79)
10. Molar Extinction Coefficient (cysteine|cystine) 62800, 63175 Computed by ProtParam module (biopython 1.79)
4 Activity Details
4.1 Target Organism(s)
E.coli (Gram-negative)
4.2 Antimicrobial Activity
Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative
4.3 Enzymatic Activity
Not found
4.4 Inhibitory Effect
Not found
4.5 Other Biological Activity
Non-hemolytic, Non-ribosomal
Activity data manually curated from Literature and UniProt
5 Database Cross-references
5.1 Literature Database
5.1.1 PubMed
Citation 1: Duchaud E, Rusniok C, Frangeul L, et al. The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens. Nat Biotechnol. 2003;21(11):1307-13. Published 2003 Nov. doi:10.1038/nbt886
PMID: 14528314
5.2 Protein Sequence Databases
UniProt: Q7MZU7
5.3 3D Structure Databases
No PDB Ids found
AlphaFoldDB: Q7MZU7
5.4 Nucleotide Sequence Databases
Sl. no. Accession(s) Access Link(s)
1. BX571873 GenBank || EMBL
CCDS: Not found
5.5 Protein-Protein Interaction Databases
IntAct: Not found
MINT: Not found
DIP: Not found
BioGRID: Not found
5.6 Ligand Databases
BindingDB: Not found
DrugBank: Not found
ChEMBL: Not found
5.7 Family & Domain Databases
PANTHER: Not found
PROSITE: Not found
5.8 Genome Annotation Databases
Ensembl: Not found
5.9 Phylogenomic Databases
GeneTree: Not found
5.10 Enzyme & Pathway Databases
BRENDA: Not found
5.11 Protein-RNA Interaction Databases
RNAct: Not found




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