AMPDB_50071 | 2Fe-2S iron-sulfur cluster binding domain-containing protein

PEPTIDE SUMMARY

2Fe-2S iron-sulfur cluster binding domain-containing protein

1 General Description

AMPDB ID: AMPDB_50071

Protein Names: 2Fe-2S iron-sulfur cluster binding domain-containing protein

Protein Family: 2Fe2S plant-type ferredoxin family

Gene Name: GMX10_04975

Source Organism: Pectobacterium polaris

Protein Length: 507 AA

Protein Existence: Inferred from homology

2 Protein Sequence & Composition

2.1 Sequence

MAIHRIYVRGENDSFECDEKTTILEAALEHGLNISYSCQSGACSSCAAILTPGGSVDQSDQSFLDEDQMDNGFILPCVCYPQSDCEVYFNAEVFLVDEPIKEINNEIRITITHGPLPAPRTIDPVRVIGWRPGEILWQGNGYYTSGSISPIEKPIINKIDEIVKKSKDILEKIKPEEIIKFISKNPLTTAIGIAMYSAFRIDSLNSNESELLASIRAESMGVDIKNIELNPENKNTIEMKYRGIIKPDFQHGYKTLMLMRTDGKNIPSSVPIRHVESDQKSGSLSFTTDDGSITLTWSPEYDQKDYGYRVTVSPAWSYQSPTNTGGQIIISDSVTTTTTPVPLDKEWKDYVLIFPDNTGLDPIYIMLDMPYGATTRGEFSGRSYNPDKSGGPTQSLEWKEIKITQAGIDKVKLHTRRFGSVPSNDIMIDRLEKILSGELDATDIDKRFYTHEIRELERYRALGVKDGVAPDDAGETWNNTHTATLEDYKVKDDHTLLYTHDALQADE

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 23, 'R': 21, 'N': 22, 'D': 42, 'C': 7, 'Q': 14, 'E': 37, 'G': 34, 'H': 10, 'I': 51, 'L': 34, 'K': 31, 'M': 10, 'F': 13, 'P': 29, 'S': 41, 'T': 38, 'W': 7, 'Y': 21, 'V': 22

Frequencies of Amino Acids

'A': 4.54%, 'R': 4.14%, 'N': 4.34%, 'D': 8.28%, 'C': 1.38%, 'Q': 2.76%, 'E': 7.3%, 'G': 6.71%, 'H': 1.97%, 'I': 10.06%, 'L': 6.71%, 'K': 6.11%, 'M': 1.97%, 'F': 2.56%, 'P': 5.72%, 'S': 8.09%, 'T': 7.5%, 'W': 1.38%, 'Y': 4.14%, 'V': 4.34%

Missing Amino Acid(s)

No Amino Acid(s) are missing in this protein

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

C, W

Hydrophobic Amino Acid(s) Count

223

Hydrophilic Amino Acid(s) Count

284

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	56837.9 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	82.505	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	37.607	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.468	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.765	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	4.562	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	-26.469	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.292, 0.249, 0.205 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.081	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	69790, 70165	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Not found

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

No PMID found

5.2 Protein Sequence Databases

UniProt: A0A6P1S0B2

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: A0A6P1S0B2

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	CP046377	GenBank \|\| EMBL

CCDS: Not found

RefSeq: WP_072012350.1

5.5 Protein-Protein Interaction Databases

STRING: Not found

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR036010, IPR001041, IPR006058, IPR012675, IPR010241, IPR016128, IPR036302

PANTHER: Not found

PROSITE: PS00197, PS51085

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: Not found

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

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