AMPDB_4920

AMPDB_4920 | Ccl

PEPTIDE SUMMARY

Ccl

1 General Description

AMPDB ID: AMPDB_4920

Protein Names: Ccl (EC 3.1.-.-)

Protein Family: Nil

Gene Name: ceaC ceaC_2 NCTC8849_00023 NCTC9617_07067 NCTC9637_06608

Source Organism: Klebsiella pneumoniae

Protein Length: 562 AA

Protein Existence: Predicted

2 Protein Sequence & Composition

2.1 Sequence

MSGGDGRGPGNSGLGHNGGQASGNVNGTSGKGGPSSGGGTDPNSGPGWGTTHTPNGDIHNYNPGEFGHGGNKPGGNGGNSGNHRGSSGGRQSSATAMAFGLPALATPGSGGLALAVSGDALSAAVADVLAALKGPFKFGLWGIAIYGVLPSEIAKDDPKMMSKIMTSLPADAVTETPASTLPLDQATVRVRQRVVDVVKDERQHIAVVAGRPMSVPVVDAKPTKRPGVFSVSIPGLPSLQVSVPKGVPTAKAPPKGIVAEKGDSRPAGFTAGGNSREAVIRFPKETGQKPVYVSVTDVLTPAQVKQRQEEEKRRQQAWDAAHPEEGLKRDYDKAKAELDAEDKNIATLNSRIASTEKALPGARAAVQEADKKVKEAEANKDDFVTYNPPHEYGSGWQDQVRYLDKDIQNQNAKLKAAQASLNAMNESLSRDKAALPGAMESRKQKEKKAKDAENKLNEEKKKPRKGAKDYGHDYHPAPKTEDIKGLGDLKKGTPKTPMQGGGGRRKRWIGDKGRKIYEWDSQHGELEGYRASDGEHLGAFDPKTGKQIKGPDPKGRNIKKYL

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 59, 'R': 28, 'N': 24, 'D': 36, 'C': 0, 'Q': 22, 'E': 30, 'G': 75, 'H': 12, 'I': 17, 'L': 31, 'K': 56, 'M': 9, 'F': 9, 'P': 42, 'S': 36, 'T': 25, 'W': 6, 'Y': 12, 'V': 33

Frequencies of Amino Acids

'A': 10.5%, 'R': 4.98%, 'N': 4.27%, 'D': 6.41%, 'C': 0%, 'Q': 3.91%, 'E': 5.34%, 'G': 13.35%, 'H': 2.14%, 'I': 3.02%, 'L': 5.52%, 'K': 9.96%, 'M': 1.6%, 'F': 1.6%, 'P': 7.47%, 'S': 6.41%, 'T': 4.45%, 'W': 1.07%, 'Y': 2.14%, 'V': 5.87%

Missing Amino Acid(s)

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

Hydrophobic Amino Acid(s) Count

281

Hydrophilic Amino Acid(s) Count

281

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	59286.4 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	60.836	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	37.356	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.815	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.73	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	10.162	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	19.131	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.192, 0.315, 0.23 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.048	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	50880, 50880	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Endonuclease, Hydrolase, Nuclease

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

No PMID found

5.2 Protein Sequence Databases

UniProt: A0A060VGK1

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: A0A060VGK1

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	UGLC01000001	GenBank \|\| EMBL
2.	UGLB01000004	GenBank \|\| EMBL
3.	UGNC01000008	GenBank \|\| EMBL

CCDS: Not found

RefSeq: WP_000012966.1

5.5 Protein-Protein Interaction Databases

STRING: Not found

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR024575, IPR036725, IPR009105, IPR024566, IPR016128, IPR036302

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: Not found

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

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