AMPDB_4245 | Bacteriocin rhamnosin A

PEPTIDE SUMMARY

Bacteriocin rhamnosin A

1 General Description

AMPDB ID: AMPDB_4245

Protein Names: Bacteriocin rhamnosin A

Protein Family: Nil

Gene Name: Nil

Source Organism: Lacticaseibacillus rhamnosus (Lactobacillus rhamnosus)

Protein Length: 13 AA

Protein Existence: Evidence at protein level

2 Protein Sequence & Composition

2.1 Sequence

AVPAVRKTNETLD

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 2, 'R': 1, 'N': 1, 'D': 1, 'C': 0, 'Q': 0, 'E': 1, 'G': 0, 'H': 0, 'I': 0, 'L': 1, 'K': 1, 'M': 0, 'F': 0, 'P': 1, 'S': 0, 'T': 2, 'W': 0, 'Y': 0, 'V': 2

Frequencies of Amino Acids

'A': 15.38%, 'R': 7.69%, 'N': 7.69%, 'D': 7.69%, 'C': 0%, 'Q': 0%, 'E': 7.69%, 'G': 0%, 'H': 0%, 'I': 0%, 'L': 7.69%, 'K': 7.69%, 'M': 0%, 'F': 0%, 'P': 7.69%, 'S': 0%, 'T': 15.38%, 'W': 0%, 'Y': 0%, 'V': 15.38%

Missing Amino Acid(s)

C, F, G, H, I, M, Q, S, W, Y

Most Occurring Amino Acid(s)

A, T, V

Less Occurring Amino Acid(s)

D, E, K, L, N, P, R

Hydrophobic Amino Acid(s) Count

Hydrophilic Amino Acid(s) Count

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	1413.59 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	90	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	27.3	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.469	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.533	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	6.494	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	-0	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.231, 0.154, 0.308 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	0, 0	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

Gram Positive Bacteria

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-Positive

4.3 Enzymatic Activity

Not found

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

Citation 1: DimitrijeviÄ R, StojanoviÄ M, ZivkoviÄ I, et al. The identification of a low molecular mass bacteriocin, rhamnosin A, produced by Lactobacillus rhamnosus strain 68. J Appl Microbiol. 2009;107(6):2108-15. Published 2009 Dec 1. doi:10.1111/j.1365-2672.2009.04539.x

PMID: 19796123

5.2 Protein Sequence Databases

UniProt: P86526

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: P86526

5.4 Nucleotide Sequence Databases

No entries found in GenBank or EMBL

CCDS: Not found

RefSeq: Not found

5.5 Protein-Protein Interaction Databases

STRING: Not found

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: Not found

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: Not found

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

Download