AMPDB_39572 | Zn-binding Pro-Ala-Ala-Arg

PEPTIDE SUMMARY

Zn-binding Pro-Ala-Ala-Arg

1 General Description

AMPDB ID: AMPDB_39572

Protein Names: Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein; incolved in TypeVI secretion

Protein Family: Nil

Gene Name: SAMN02982996_02357

Source Organism: Lonsdalea quercina

Protein Length: 390 AA

Protein Existence: Predicted

2 Protein Sequence & Composition

2.1 Sequence

MPGAARLNDIGSGHACFPATPVVAGSQDVIINGQPAARQGDGVQLHGCPCPNVPHGLHPRQIAAGSSTVIINGKQAARIGDEINCGGNIVSGSSNVIIGNIPYQSPVAGCAQQSAQRRDPLLALSPMLTTPPVFAKSCLRGEGCTDAGTEKETVDNFGQMALFAQPVVDDCCGYRPPHANKPVVQHAQAAKKKKPSQFTEPAAASTPVQLTGSEPWYKTLYYLMSSKEIAVTPTPLAKSAIEPVAAAVPVATMSAGNTVATRAAVTTMTQVWGQVTLTEGTLAASTTVPLLGVLFSALYSPAVGEGSDKVPGRDEHWLEDTLRQKGWAGETATTRVRFFWRHDIHGNMQVYGVHTGEGTPYEGVRVANMVWKPEQSRYEFTPAPGVDGPK

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 45, 'R': 16, 'N': 13, 'D': 14, 'C': 9, 'Q': 21, 'E': 17, 'G': 39, 'H': 10, 'I': 15, 'L': 21, 'K': 15, 'M': 8, 'F': 9, 'P': 34, 'S': 23, 'T': 31, 'W': 6, 'Y': 9, 'V': 35

Frequencies of Amino Acids

'A': 11.54%, 'R': 4.1%, 'N': 3.33%, 'D': 3.59%, 'C': 2.31%, 'Q': 5.38%, 'E': 4.36%, 'G': 10%, 'H': 2.56%, 'I': 3.85%, 'L': 5.38%, 'K': 3.85%, 'M': 2.05%, 'F': 2.31%, 'P': 8.72%, 'S': 5.9%, 'T': 7.95%, 'W': 1.54%, 'Y': 2.31%, 'V': 8.97%

Missing Amino Acid(s)

No Amino Acid(s) are missing in this protein

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

Hydrophobic Amino Acid(s) Count

212

Hydrophilic Amino Acid(s) Count

178

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	41085.6 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	73.564	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	43.21	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.203	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.741	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	7.499	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	0.374	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.244, 0.279, 0.233 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.062	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	46410, 46910	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Not found

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

No PMID found

5.2 Protein Sequence Databases

UniProt: A0A1H4DJT9

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: A0A1H4DJT9

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	FNQS01000007	GenBank \|\| EMBL

CCDS: Not found

RefSeq: Not found

5.5 Protein-Protein Interaction Databases

STRING: 1082705.JIBP01000002_gene1980

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR008727, IPR016128, IPR036302

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: Not found

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

Download