AMPDB_39242 | Hcp protein
PEPTIDE SUMMARY
Hcp protein
1 General Description
AMPDB ID: AMPDB_39242
Protein Names: Hcp protein
Protein Family: Nil
Gene Name: het1
Source Organism: Escherichia coli
Protein Length: 449 AA
Protein Existence: Predicted
2 Protein Sequence & Composition
2.1 Sequence
MGDIVYLRIIGEKQGDISSGCGTYASVGNRWQVGHEDEIFAFALTNAITSTGNGVNLQGLQFCKLIDKSSPLLSNAINQNERLFIEIDLYRINKSGRWERYYYIQLRNASLTAIHVNISDNNLPTECVTVDYDYILCKHLIANTEFDWLAFPAGYNSLFIPPKSPPASNLKPEPLPVVNLPLSSPAVNPVYAKSCLKVKGCTDAGTAEEPAENFGQVAIFVQPVVDDCCGYHHPEANVIGEPAEAQTMLLFPSSVLATQIWGKWSLSGVLSATRGSYIGALASALYIPSAGEGSARVPGRDEFWYEEELRQKALAGSTATTRVRFFWGTDIHGKPQVYGVHTGEGTPYENVRVANMQWNEQTQRYEFTPAHDVDGPLITWTPENPEHGNVPGHTGNDRPPLEQPTILVTPIPDGTDTYRRHSRFLIRKNSTIIFWFFRRDPVLSLSMFT
FASTA format
2.2 Composition
Counts of Amino Acids
'A': 32, 'R': 22, 'N': 26, 'D': 20, 'C': 8, 'Q': 16, 'E': 27, 'G': 35, 'H': 11, 'I': 29, 'L': 36, 'K': 14, 'M': 4, 'F': 19, 'P': 33, 'S': 30, 'T': 30, 'W': 10, 'Y': 18, 'V': 29
Frequencies of Amino Acids
'A': 7.13%, 'R': 4.9%, 'N': 5.79%, 'D': 4.45%, 'C': 1.78%, 'Q': 3.56%, 'E': 6.01%, 'G': 7.8%, 'H': 2.45%, 'I': 6.46%, 'L': 8.02%, 'K': 3.12%, 'M': 0.89%, 'F': 4.23%, 'P': 7.35%, 'S': 6.68%, 'T': 6.68%, 'W': 2.23%, 'Y': 4.01%, 'V': 6.46%
Missing Amino Acid(s)
No Amino Acid(s) are missing in this protein
Most Occurring Amino Acid(s)
L
Less Occurring Amino Acid(s)
M
Hydrophobic Amino Acid(s) Count
227
Hydrophilic Amino Acid(s) Count
222
Basic Amino Acid(s) Count
47
Acidic Amino Acid(s) Count
47
Modified Amino Acid(s) Count
0
Modified Amino Acid(s) Frequencies
0
Computed by biopython (version 1.79) & proteinAnalysis (version 1)
3 Physicochemical Properties
Sl. No. Properties Values Reference
1. Molecular Mass 49859.2 Da Computed by ProtParam module (biopython 1.79)
2. Aliphatic Index 82.316 Computed by ProtParam module (biopython 1.79)
3. Instability Index (Half Life) 37.821 Computed by ProtParam module (biopython 1.79)
4. Hydrophobicity (GRAVY) -0.261 Computed by ProtParam module (biopython 1.79)
5. Hydrophobic Moment 0.765 Computed by ProtParam module (biopython 1.79)
6. Isoelectric Point 5.598 Computed by ProtParam module (biopython 1.79)
7. Charge (at pH 7) -10.461 Computed by ProtParam module (biopython 1.79)
8. Secondary Structure Fraction 0.314, 0.276, 0.22 [Helix, Turn, Sheet] Computed by ProtParam module (biopython 1.79)
9. Aromaticity 0.105 Computed by ProtParam module (biopython 1.79)
10. Molar Extinction Coefficient (cysteine|cystine) 81820, 82320 Computed by ProtParam module (biopython 1.79)
4 Activity Details
4.1 Target Organism(s)
E.coli (Gram-negative)
4.2 Antimicrobial Activity
Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative
4.3 Enzymatic Activity
Not found
4.4 Inhibitory Effect
Not found
4.5 Other Biological Activity
Non-hemolytic, Non-ribosomal
Activity data manually curated from Literature and UniProt
5 Database Cross-references
5.1 Literature Database
5.1.1 PubMed
No PMID found
5.2 Protein Sequence Databases
UniProt: A0A1C9CJD4
5.3 3D Structure Databases
No PDB Ids found
AlphaFoldDB: A0A1C9CJD4
5.4 Nucleotide Sequence Databases
Sl. no. Accession(s) Access Link(s)
1. KX118289 GenBank || EMBL
CCDS: Not found
RefSeq: Not found
5.5 Protein-Protein Interaction Databases
STRING: Not found
IntAct: Not found
MINT: Not found
DIP: Not found
BioGRID: Not found
5.6 Ligand Databases
BindingDB: Not found
DrugBank: Not found
ChEMBL: Not found
5.7 Family & Domain Databases
PANTHER: Not found
PROSITE: Not found
5.8 Genome Annotation Databases
Ensembl: Not found
KEGG: Not found
5.9 Phylogenomic Databases
GeneTree: Not found
5.10 Enzyme & Pathway Databases
BRENDA: Not found
BioCyc: Not found
5.11 Protein-RNA Interaction Databases
RNAct: Not found




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