AMPDB_39224 | Pyocin large subunit

PEPTIDE SUMMARY

Pyocin large subunit

1 General Description

AMPDB ID: AMPDB_39224

Protein Names: Pyocin large subunit

Protein Family: Nil

Gene Name: BN1044_04370

Source Organism: Hafnia alvei

Protein Length: 452 AA

Protein Existence: Predicted

2 Protein Sequence & Composition

2.1 Sequence

MGYRPNIMGKGKALSCDKTTTGAKLIASLPTSQYMVYGHAVIRVGDSTTECPKCGKRGRVIEGEPSFIIMGKVLAVDGAIVLCGCPSGSNRIIAPFGQWLGAGLSPAQQSAEKQAAKIAADAAERAENKAKEQAKRSMPVFAKSQERGEGNTEAGTGPETHENFALMGYFRAVPLPEPEQHAQSAKRPASPPPEPEKPWYKKLFGGASSAAPAVAVPVAASTVFPSGSAALEWVGGRFITAGSWAVRAVVPFGEIAAAGAGAPIAVALIGMMPRTLNSGEQDFIDQMRLAQLAESGGKAPTRVRFRWEDDGHGSLSPKGYHTPTESGLSEVPVREMKLNTKTGLYEFTTEGVKPVTIYWNPDKLELDIPSNTGHQGSPSLPSSITVLPIPEKVGSDIESYPAPTEGDFEDYILIFLGTDMPPIYIYLSKPPVEFLEVELYSDFKRRSRQGKY

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 49, 'R': 21, 'N': 9, 'D': 15, 'C': 5, 'Q': 14, 'E': 34, 'G': 46, 'H': 6, 'I': 24, 'L': 28, 'K': 27, 'M': 11, 'F': 16, 'P': 41, 'S': 35, 'T': 24, 'W': 6, 'Y': 14, 'V': 27

Frequencies of Amino Acids

'A': 10.84%, 'R': 4.65%, 'N': 1.99%, 'D': 3.32%, 'C': 1.11%, 'Q': 3.1%, 'E': 7.52%, 'G': 10.18%, 'H': 1.33%, 'I': 5.31%, 'L': 6.19%, 'K': 5.97%, 'M': 2.43%, 'F': 3.54%, 'P': 9.07%, 'S': 7.74%, 'T': 5.31%, 'W': 1.33%, 'Y': 3.1%, 'V': 5.97%

Missing Amino Acid(s)

No Amino Acid(s) are missing in this protein

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

Hydrophobic Amino Acid(s) Count

248

Hydrophilic Amino Acid(s) Count

204

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	48358.1 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	73.031	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	51.986	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.286	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.629	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	7.102	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	-0.719	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.254, 0.29, 0.27 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.08	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	53860, 54110	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Not found

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

No PMID found

5.2 Protein Sequence Databases

UniProt: A0A1C6Z7H2

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: A0A1C6Z7H2

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	FMIQ01000082	GenBank \|\| EMBL

CCDS: Not found

RefSeq: WP_072310459.1

5.5 Protein-Protein Interaction Databases

STRING: Not found

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR008727, IPR016128, IPR036302

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: Not found

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

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