AMPDB_38483 | PAAR S-type pyocin domain protein

PEPTIDE SUMMARY

PAAR S-type pyocin domain protein

1 General Description

AMPDB ID: AMPDB_38483

Protein Names: PAAR S-type pyocin domain protein

Protein Family: Nil

Gene Name: YpsIP31758_0897

Source Organism: Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)

Protein Length: 510 AA

Protein Existence: Predicted

2 Protein Sequence & Composition

2.1 Sequence

MAKGYYLVVGDETTCGGVITEGEPTHTIMGRAVAREQDRITCGKHPGTYIIVGHIPGDTILGRKFAGSLHSTSNCPCKARFIPSMMNDAYELIGSPASGQSSIAPSFTETSESPPDVTPVFAKSCLREKGCTDAGTEGEPHRNFGKMAFYQAIPPSPTSPTDNNEVEQRAQTARRKPVETEPDVKTPWYKRVLGRTRAASAAVVVPVSTGAGVAALEQAGIQGMRFVGGNLMTAGRWMVGSSPVGAAIMGMMPGTLNEGETDLLDKLKLENIAKNGGSAPTRVRFRWVDSGNGRLKAEGYHMSAEGGLDRVPVRKMTLNVFTGNYEFWEDGAAGPTILWTPNDPGFKAPSNTGNNDGPIIRTTITVLPMPEADETGEHSTTLPMPEEKDFRDYILIHPLLDLPPLYIYLSKNPDDPIWTERKKITPVQNAYGHWKKHGSEFPELTNSKEYVDATHDFVNNPPDGALNKTRNNGDELFYHPESNTLGIKAKNGAPRTMFKPTDKMDYWNDQ

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 38, 'R': 26, 'N': 27, 'D': 28, 'C': 6, 'Q': 9, 'E': 33, 'G': 51, 'H': 12, 'I': 24, 'L': 29, 'K': 28, 'M': 17, 'F': 16, 'P': 44, 'S': 27, 'T': 44, 'W': 8, 'Y': 15, 'V': 28

Frequencies of Amino Acids

'A': 7.45%, 'R': 5.1%, 'N': 5.29%, 'D': 5.49%, 'C': 1.18%, 'Q': 1.76%, 'E': 6.47%, 'G': 10%, 'H': 2.35%, 'I': 4.71%, 'L': 5.69%, 'K': 5.49%, 'M': 3.33%, 'F': 3.14%, 'P': 8.63%, 'S': 5.29%, 'T': 8.63%, 'W': 1.57%, 'Y': 2.94%, 'V': 5.49%

Missing Amino Acid(s)

No Amino Acid(s) are missing in this protein

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

Hydrophobic Amino Acid(s) Count

255

Hydrophilic Amino Acid(s) Count

255

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	55628.7 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	63.902	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	38.737	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.545	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.751	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	6.385	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	-6.233	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.235, 0.292, 0.229 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.076	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	66350, 66725	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Not found

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

Citation 1: Eppinger M, Rosovitz MJ, Fricke WF, et al. The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever. PLoS Genet. 2007;3(8):e142. Published 2007 Aug. doi:10.1371/journal.pgen.0030142

PMID: 17784789

5.2 Protein Sequence Databases

UniProt: A0A0U1R3D0

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: A0A0U1R3D0

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	CP000720	GenBank \|\| EMBL

CCDS: Not found

RefSeq: WP_012104685.1

5.5 Protein-Protein Interaction Databases

STRING: Not found

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR008727, IPR016128, IPR036302

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: ypi:YpsIP31758_0897

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

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