AMPDB_37891 | Colicin E3 catalytic

PEPTIDE SUMMARY

Colicin E3 catalytic

1 General Description

AMPDB ID: AMPDB_37891

Protein Names: Colicin E3 catalytic

Protein Family: Nil

Gene Name: Rahaq_0970

Source Organism: Rahnella sp. (strain Y9602)

Protein Length: 509 AA

Protein Existence: Predicted

2 Protein Sequence & Composition

2.1 Sequence

MGYRSNCYGRGQALHGDKTTTGAVCLTSLPNATEHGLGVIRIGDATTDCPKCGRRGKITSGEPHSTYDGLASAVDGSDVLCGCPPGTNRVIAPAGQWMGRGKSPAELAREKWEAERAAVLLVQAEKEAAEQARRSMPVFAKSAECGAGNTEARTCEEQHHNFGRLSYGVPTPVAGIKPEVEQHAQATKRKKPAGDKKPWYKKIFGAKADAPAQSGMPLVIPVATGGGAELIASGMSALRGVTSIRLGSLFVNPVTVGVIGTFYSNKLNAGEEDILSDSQLAALAGKSAPTRIRFQWVKDKYGRLIPVAYHTGADSGLDQVRVRAMRRNIFTGNYEFWADGAEKPTIIWTPDELEFKAPGNTGNRDEPYLPSTITVLPLPGAEEMGSTSTSLPIPDEQSFDDYILVNLPHGMPPIYIYLSNDHKYHVAPKGNPPLPAFPDAKKAVSKTLIKGGGKFRYRWKDSKKTIYEWDSQHGTVEVYDKSGRNHLGEFDPVTGKQTKPADPARKVEK

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 51, 'R': 28, 'N': 16, 'D': 26, 'C': 8, 'Q': 14, 'E': 30, 'G': 54, 'H': 12, 'I': 23, 'L': 32, 'K': 37, 'M': 8, 'F': 13, 'P': 39, 'S': 30, 'T': 33, 'W': 8, 'Y': 17, 'V': 30

Frequencies of Amino Acids

'A': 10.02%, 'R': 5.5%, 'N': 3.14%, 'D': 5.11%, 'C': 1.57%, 'Q': 2.75%, 'E': 5.89%, 'G': 10.61%, 'H': 2.36%, 'I': 4.52%, 'L': 6.29%, 'K': 7.27%, 'M': 1.57%, 'F': 2.55%, 'P': 7.66%, 'S': 5.89%, 'T': 6.48%, 'W': 1.57%, 'Y': 3.34%, 'V': 5.89%

Missing Amino Acid(s)

No Amino Acid(s) are missing in this protein

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

C, M, W

Hydrophobic Amino Acid(s) Count

258

Hydrophilic Amino Acid(s) Count

251

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	54956.2 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	69.253	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	36.633	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.502	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.625	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	9.051	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	9.632	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.242, 0.273, 0.238 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.075	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	69330, 69830	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Not found

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

Citation 1: Martinez RJ, Bruce D, Detter C, et al. Complete genome sequence of Rahnella sp. strain Y9602, a gammaproteobacterium isolate from metal- and radionuclide-contaminated soil. J Bacteriol. 2012;194(8):2113-4. Published 2012 Apr. doi:10.1128/JB.00095-12

PMID: 22461551

5.2 Protein Sequence Databases

UniProt: A0A0H3F996

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: A0A0H3F996

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	CP002505	GenBank \|\| EMBL

CCDS: Not found

RefSeq: WP_013574300.1

5.5 Protein-Protein Interaction Databases

STRING: 741091.Rahaq_0970

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR036725, IPR009105, IPR008727, IPR016128, IPR036302

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: rah:Rahaq_0970

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

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