AMPDB_3786 | Zeamatin
PEPTIDE SUMMARY
Zeamatin
1 General Description
AMPDB ID: AMPDB_3786
Protein Names: Zeamatin
Protein Family: Thaumatin family
Gene Name: Zlp
Source Organism: Zea mays (Maize)
Protein Length: 227 AA
Protein Existence: Evidence at protein level
2 Protein Sequence & Composition
2.1 Sequence
MAGSVAIVGIFVALLAVAGEAAVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP
FASTA format
2.2 Composition
Counts of Amino Acids
'A': 27, 'R': 13, 'N': 12, 'D': 13, 'C': 16, 'Q': 6, 'E': 5, 'G': 25, 'H': 1, 'I': 6, 'L': 10, 'K': 7, 'M': 2, 'F': 13, 'P': 14, 'S': 13, 'T': 14, 'W': 3, 'Y': 8, 'V': 19
Frequencies of Amino Acids
'A': 11.89%, 'R': 5.73%, 'N': 5.29%, 'D': 5.73%, 'C': 7.05%, 'Q': 2.64%, 'E': 2.2%, 'G': 11.01%, 'H': 0.44%, 'I': 2.64%, 'L': 4.41%, 'K': 3.08%, 'M': 0.88%, 'F': 5.73%, 'P': 6.17%, 'S': 5.73%, 'T': 6.17%, 'W': 1.32%, 'Y': 3.52%, 'V': 8.37%
Missing Amino Acid(s)
No Amino Acid(s) are missing in this protein
Most Occurring Amino Acid(s)
A
Less Occurring Amino Acid(s)
H
Hydrophobic Amino Acid(s) Count
119
Hydrophilic Amino Acid(s) Count
108
Basic Amino Acid(s) Count
18
Acidic Amino Acid(s) Count
21
Modified Amino Acid(s) Count
0
Modified Amino Acid(s) Frequencies
0
Computed by biopython (version 1.79) & proteinAnalysis (version 1)
3 Physicochemical Properties
Sl. No. Properties Values Reference
1. Molecular Mass 23999.1 Da Computed by ProtParam module (biopython 1.79)
2. Aliphatic Index 63.656 Computed by ProtParam module (biopython 1.79)
3. Instability Index (Half Life) 30.396 Computed by ProtParam module (biopython 1.79)
4. Hydrophobicity (GRAVY) -0.031 Computed by ProtParam module (biopython 1.79)
5. Hydrophobic Moment 0.692 Computed by ProtParam module (biopython 1.79)
6. Isoelectric Point 7.64 Computed by ProtParam module (biopython 1.79)
7. Charge (at pH 7) 1.103 Computed by ProtParam module (biopython 1.79)
8. Secondary Structure Fraction 0.26, 0.282, 0.194 [Helix, Turn, Sheet] Computed by ProtParam module (biopython 1.79)
9. Aromaticity 0.106 Computed by ProtParam module (biopython 1.79)
10. Molar Extinction Coefficient (cysteine|cystine) 28420, 29420 Computed by ProtParam module (biopython 1.79)
4 Activity Details
4.1 Target Organism(s)
Alternaria solani, Candida albicans, Neurospora, Trichoderma reesei
4.2 Antimicrobial Activity
Antimicrobial, Fungicide, Plant defense, Anti-candida
4.3 Enzymatic Activity
Not found
4.4 Inhibitory Effect
Not found
4.5 Other Biological Activity
Non-hemolytic, Non-ribosomal
Activity data manually curated from Literature and UniProt
5 Database Cross-references
5.1 Literature Database
5.1.1 PubMed
Citation 1: Malehorn DE, Borgmeyer JR, Smith CE, et al. Characterization and expression of an antifungal zeamatin-like protein (Zlp) gene from Zea mays. Plant Physiol. 1994;106(4):1471-81. Published 1994 Dec. doi:10.1104/pp.106.4.1471
PMID: 7846159
Citation 2: Batalia MA, Monzingo AF, Ernst S, et al. The crystal structure of the antifungal protein zeamatin, a member of the thaumatin-like, PR-5 protein family. Nat Struct Biol. 1996;3(1):19-23. Published 1996 Jan. doi:10.1038/nsb0196-19
PMID: 8548448
5.2 Protein Sequence Databases
UniProt: P33679
5.3 3D Structure Databases
Sl. no. PDB ID Method Resolution Access Links 3D View
AlphaFoldDB: P33679
5.4 Nucleotide Sequence Databases
Sl. no. Accession(s) Access Link(s)
1. U06831 GenBank || EMBL
CCDS: Not found
5.5 Protein-Protein Interaction Databases
IntAct: Not found
MINT: Not found
DIP: Not found
BioGRID: Not found
5.6 Ligand Databases
BindingDB: Not found
DrugBank: Not found
ChEMBL: Not found
5.7 Family & Domain Databases
PANTHER: PTHR31048
PROSITE: PS00316, PS51367
5.8 Genome Annotation Databases
Ensembl: Not found
5.9 Phylogenomic Databases
GeneTree: Not found
5.10 Enzyme & Pathway Databases
BRENDA: Not found
BioCyc: Not found
5.11 Protein-RNA Interaction Databases
RNAct: Not found




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