AMPDB_37756 | PAAR S-type pyocin domain-containing protein

PEPTIDE SUMMARY

PAAR S-type pyocin domain-containing protein

1 General Description

AMPDB ID: AMPDB_37756

Protein Names: PAAR S-type pyocin domain-containing protein

Protein Family: Nil

Gene Name: ERS008478_04112

Source Organism: Yersinia wautersii

Protein Length: 364 AA

Protein Existence: Predicted

2 Protein Sequence & Composition

2.1 Sequence

MAFYQTIPPLPTSPTDNNEVEQRAQTARRKPVETEPEVKTPWYKRVLGRTSAAPAAVVVPVSTGAGLAALEQAGIQGMRFVGGNLMTAGRWMVGSSPVGAAIMGMMTGTLNEGETDLLDKLKLENIAKNGGSAPTRVRFRWVDSGNGRLKAEGYHMSAEGGLDRVPVRKMTLNVFTGNYEFWEDGAAGPTILWTPNDPGFKAPSNTGNNDGPIIRTTITVLPMPEADETGEHSTTLPMPEEKDFRDYILIHPLLDLPPLYIYLSKNPDDPIWTERKKITPVQNAYGHWKKHGSEFPELTNSKEYVDATHDFVNNPPDGALNKTRNNGDELFYHPESNTLGIKAKNGAPRTMFKPTDKMDYWNDQ

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 27, 'R': 18, 'N': 24, 'D': 21, 'C': 0, 'Q': 7, 'E': 24, 'G': 33, 'H': 7, 'I': 14, 'L': 26, 'K': 21, 'M': 13, 'F': 11, 'P': 33, 'S': 14, 'T': 32, 'W': 8, 'Y': 11, 'V': 20

Frequencies of Amino Acids

'A': 7.42%, 'R': 4.95%, 'N': 6.59%, 'D': 5.77%, 'C': 0%, 'Q': 1.92%, 'E': 6.59%, 'G': 9.07%, 'H': 1.92%, 'I': 3.85%, 'L': 7.14%, 'K': 5.77%, 'M': 3.57%, 'F': 3.02%, 'P': 9.07%, 'S': 3.85%, 'T': 8.79%, 'W': 2.2%, 'Y': 3.02%, 'V': 5.49%

Missing Amino Acid(s)

Most Occurring Amino Acid(s)

G, P

Less Occurring Amino Acid(s)

H, Q

Hydrophobic Amino Acid(s) Count

185

Hydrophilic Amino Acid(s) Count

179

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	40211.3 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	66.209	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	35.062	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.611	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.59	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	5.945	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	-5.329	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.247, 0.286, 0.247 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.082	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	60390, 60390	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Not found

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

No PMID found

5.2 Protein Sequence Databases

UniProt: A0A0E8XNQ1

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: A0A0E8XNQ1

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	CVMG01000050	GenBank \|\| EMBL

CCDS: Not found

RefSeq: Not found

5.5 Protein-Protein Interaction Databases

STRING: Not found

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR016128, IPR036302

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: Not found

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

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