AMPDB_35785 | Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 7 17

PEPTIDE SUMMARY

Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 7 17

1 General Description

AMPDB ID: AMPDB_35785

Protein Names: Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 7 17

Protein Family: Colicin pyosin nuclease family

Gene Name: plu1894

Source Organism: Photorhabdus laumondii subsp. laumondii (strain DSM 15139 CIP 105565 TT01)

Protein Length: 562 AA

Protein Existence: Inferred from homology

2 Protein Sequence & Composition

2.1 Sequence

MAIGYYLLVGDKTTCGGQIITGDHTMTFNGRATAREGDKVTCGKHPGTYMIVGGISDMFDMGQRLAGTLDSVSTCPCRARFINSVMDSYEKQEQPRQQAVTPAYTATQNFSSPMKEATTVQSNPPPVTQVPPPPIPVFAKSRQRGKGCTDAGTETEPANNFGRMGIYQVLSSPAPVTESKPEQPPQGKKHPPEPDKPQDKKLPWYKRWFSNSKDKAEAAATAVAATTRSAVADGEALVMRFIGGGVTSAGRWLAAPNPLTVGLMGLFYSSGLNESEEDYLNQYHLSEIASQYGKAPTRVRFRWIRDEKSGRMTVQGYHVSPESGLDKVPVRMMKRNPVTGNYEFWEPGEYRPTILWTPNDQEFKVPPHTGNEEQPFIPSQITVLPIPDKVGSDIESLPMPEEKDFRDYILVFPAGSGMKPVYVMFNTPRNQPGVVTGQGQRVEGNWLSLAGQDMGAPIPSQIADKLRGRRFNNFDDFRRAFWKEVGNDPELSQQFNSHNKEFLKKSYSPYSPRQEHIGNREKYEIHHVKFIKDGGEVYNLDNLRVTTPKRHIEIHSSKGGIK

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 33, 'R': 33, 'N': 25, 'D': 27, 'C': 5, 'Q': 28, 'E': 35, 'G': 50, 'H': 12, 'I': 25, 'L': 26, 'K': 35, 'M': 17, 'F': 23, 'P': 51, 'S': 37, 'T': 36, 'W': 8, 'Y': 20, 'V': 36

Frequencies of Amino Acids

'A': 5.87%, 'R': 5.87%, 'N': 4.45%, 'D': 4.8%, 'C': 0.89%, 'Q': 4.98%, 'E': 6.23%, 'G': 8.9%, 'H': 2.14%, 'I': 4.45%, 'L': 4.63%, 'K': 6.23%, 'M': 3.02%, 'F': 4.09%, 'P': 9.07%, 'S': 6.58%, 'T': 6.41%, 'W': 1.42%, 'Y': 3.56%, 'V': 6.41%

Missing Amino Acid(s)

No Amino Acid(s) are missing in this protein

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

Hydrophobic Amino Acid(s) Count

269

Hydrophilic Amino Acid(s) Count

293

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	62607.7 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	59.84	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	49.681	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.684	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.676	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	8.927	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	6.826	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.246, 0.29, 0.198 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.091	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	73800, 74050	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Hydrolase

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

Citation 1: Duchaud E, Rusniok C, Frangeul L, et al. The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens. Nat Biotechnol. 2003;21(11):1307-13. Published 2003 Nov. doi:10.1038/nbt886

PMID: 14528314

5.2 Protein Sequence Databases

UniProt: Q7N5Q1

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: Q7N5Q1

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	BX571865	GenBank \|\| EMBL

CCDS: Not found

RefSeq: Not found

5.5 Protein-Protein Interaction Databases

STRING: 243265.plu1894

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR037146, IPR044925, IPR003615, IPR008727, IPR003060, IPR016128, IPR036302

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: plu:plu1894

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

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