AMPDB_32606 | Antifungal protein Lap
PEPTIDE SUMMARY
Antifungal protein Lap
1 General Description
AMPDB ID: AMPDB_32606
Protein Names: Antifungal protein Lap
Protein Family: Nil
Gene Name: Nil
Protein Length: 30 AA
Protein Existence: Evidence at protein level
2 Protein Sequence & Composition
2.1 Sequence
AGTEIVTCYNAGTKVPRGPSAXGGAIDFFN
FASTA format
2.2 Composition
Counts of Amino Acids
'A': 4, 'R': 1, 'N': 2, 'D': 1, 'C': 1, 'Q': 0, 'E': 1, 'G': 5, 'H': 0, 'I': 2, 'L': 0, 'K': 1, 'M': 0, 'F': 2, 'P': 2, 'S': 1, 'T': 3, 'W': 0, 'Y': 1, 'V': 2
Frequencies of Amino Acids
'A': 13.33%, 'R': 3.33%, 'N': 6.67%, 'D': 3.33%, 'C': 3.33%, 'Q': 0%, 'E': 3.33%, 'G': 16.67%, 'H': 0%, 'I': 6.67%, 'L': 0%, 'K': 3.33%, 'M': 0%, 'F': 6.67%, 'P': 6.67%, 'S': 3.33%, 'T': 10%, 'W': 0%, 'Y': 3.33%, 'V': 6.67%
Missing Amino Acid(s)
H, L, M, Q, W
Most Occurring Amino Acid(s)
G
Less Occurring Amino Acid(s)
C, D, E, K, R, S, X, Y
Hydrophobic Amino Acid(s) Count
17
Hydrophilic Amino Acid(s) Count
12
Basic Amino Acid(s) Count
2
Acidic Amino Acid(s) Count
2
Modified Amino Acid(s) Count
{'X': 1}
Modified Amino Acid(s) Frequencies
{'X': 0.03333333333333333}
Computed by biopython (version 1.79) & proteinAnalysis (version 1)
3 Physicochemical Properties
Sl. No. Properties Values Reference
1. Molecular Mass 2914.24 Da Computed by ProtParam module (biopython 1.79)
2. Aliphatic Index 58.667 Computed by ProtParam module (biopython 1.79)
3. Instability Index (Half Life) 14.623 Computed by ProtParam module (biopython 1.79)
4. Hydrophobicity (GRAVY) 0.03 Computed by ProtParam module (biopython 1.79)
5. Hydrophobic Moment 0.561 Computed by ProtParam module (biopython 1.79)
6. Isoelectric Point 6.314 Computed by ProtParam module (biopython 1.79)
7. Charge (at pH 7) -0.063 Computed by ProtParam module (biopython 1.79)
8. Secondary Structure Fraction 0.233, 0.333, 0.167 [Helix, Turn, Sheet] Computed by ProtParam module (biopython 1.79)
9. Aromaticity 0.1 Computed by ProtParam module (biopython 1.79)
10. Molar Extinction Coefficient (cysteine|cystine) 1490, 1490 Computed by ProtParam module (biopython 1.79)
4 Activity Details
4.1 Target Organism(s)
P.piricola
4.2 Antimicrobial Activity
Antimicrobial, Fungicide, Anti-HIV
4.3 Enzymatic Activity
Not found
4.4 Inhibitory Effect
Not found
4.5 Other Biological Activity
Non-hemolytic, Non-ribosomal
Activity data manually curated from Literature and UniProt
5 Database Cross-references
5.1 Literature Database
5.1.1 PubMed
Citation 1: Lam SK, Ng TB, Ng TB. First simultaneous isolation of a ribosome inactivating protein and an antifungal protein from a mushroom (Lyophyllum shimeji) together with evidence for synergism of their antifungal effects. Arch Biochem Biophys. 2001;393(2):271-80. Published 2001 Sep 15. doi:10.1006/abbi.2001.2506
PMID: 11556814
5.2 Protein Sequence Databases
UniProt: C0HM10
5.3 3D Structure Databases
No PDB Ids found
AlphaFoldDB: C0HM10
5.4 Nucleotide Sequence Databases
No entries found in GenBank or EMBL
CCDS: Not found
RefSeq: Not found
5.5 Protein-Protein Interaction Databases
STRING: Not found
IntAct: Not found
MINT: Not found
DIP: Not found
BioGRID: Not found
5.6 Ligand Databases
BindingDB: Not found
DrugBank: Not found
ChEMBL: Not found
5.7 Family & Domain Databases
InterPro: Not found
PANTHER: Not found
PROSITE: Not found
5.8 Genome Annotation Databases
Ensembl: Not found
KEGG: Not found
5.9 Phylogenomic Databases
GeneTree: Not found
5.10 Enzyme & Pathway Databases
BRENDA: Not found
BioCyc: Not found
5.11 Protein-RNA Interaction Databases
RNAct: Not found




© 2023 B&BL, DoAS, IIIT-A, UP-211015, India