AMPDB_3221 | Temporin-CG1

PEPTIDE SUMMARY

Temporin-CG1

1 General Description

AMPDB ID: AMPDB_3221

Protein Names: Temporin-CG1

Protein Family: Frog skin active peptide (FSAP) family; Temporin subfamily

Gene Name: Nil

Source Organism: Amolops chunganensis (Chungan torrent frog) (Hylorana chunganensis)

Protein Length: 60 AA

Protein Existence: Evidence at protein level

2 Protein Sequence & Composition

2.1 Sequence

MFTLKKSLLLLFFLATINLSLCEQERNAEEERRDDDERNAEVEKRFLPFVGNLLKGLLGK

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 3, 'R': 5, 'N': 4, 'D': 3, 'C': 1, 'Q': 1, 'E': 8, 'G': 3, 'H': 0, 'I': 1, 'L': 13, 'K': 5, 'M': 1, 'F': 5, 'P': 1, 'S': 2, 'T': 2, 'W': 0, 'Y': 0, 'V': 2

Frequencies of Amino Acids

'A': 5%, 'R': 8.33%, 'N': 6.67%, 'D': 5%, 'C': 1.67%, 'Q': 1.67%, 'E': 13.33%, 'G': 5%, 'H': 0%, 'I': 1.67%, 'L': 21.67%, 'K': 8.33%, 'M': 1.67%, 'F': 8.33%, 'P': 1.67%, 'S': 3.33%, 'T': 3.33%, 'W': 0%, 'Y': 0%, 'V': 3.33%

Missing Amino Acid(s)

H, W, Y

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

C, I, M, P, Q

Hydrophobic Amino Acid(s) Count

Hydrophilic Amino Acid(s) Count

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	7013.15 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	105.667	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	44.143	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.295	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.662	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	5.068	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	-1.05	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.35, 0.167, 0.417 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.083	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	0, 0	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

Gram Negative Bacteria and Gram Positive Bacteria

4.2 Antimicrobial Activity

Amphibian defense peptide, Antibiotic, Antimicrobial, Fungicide, Anti-gram-negative, Anti-gram-Positive

4.3 Enzymatic Activity

Not found

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Cytolysis, Hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

Citation 1: Yang X, Xia J, Yu Z, et al. Characterization of diverse antimicrobial peptides in skin secretions of Chungan torrent frog Amolops chunganensis. Peptides. 2012;38(1):41-53. Published 2012 Nov. doi:10.1016/j.peptides.2012.08.008

PMID: 22951323

5.2 Protein Sequence Databases

UniProt: E1AWD7

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: E1AWD7

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	HQ009833	GenBank \|\| EMBL
2.	HQ009835	GenBank \|\| EMBL

CCDS: Not found

RefSeq: Not found

5.5 Protein-Protein Interaction Databases

STRING: Not found

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR004275

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: Not found

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

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