AMPDB_3065 | M-poneritoxin-Dq4b U1-poneritoxin-Dq4c U1-poneritoxin-Dq4d
PEPTIDE SUMMARY
M-poneritoxin-Dq4b U1-poneritoxin-Dq4c U1-poneritoxin-Dq4d
1 General Description
AMPDB ID: AMPDB_3065
Protein Names: M-poneritoxin-Dq4b U1-poneritoxin-Dq4c U1-poneritoxin-Dq4d (M-PONTX-Dq4b U1-PONTX-Dq4c U1-PONTX-Dq4d) (Dinoponeratoxin Dq-3162 Dq-3163 Dq-3178) (Poneratoxin)
Protein Family: Nil
Gene Name: Nil
Protein Length: 28 AA
Protein Existence: Evidence at protein level
2 Protein Sequence & Composition
2.1 Sequence
GLKDWWNKHKDKIVEVVKEMGKAGLNAA
FASTA format
2.2 Composition
Counts of Amino Acids
'A': 3, 'R': 0, 'N': 2, 'D': 2, 'C': 0, 'Q': 0, 'E': 2, 'G': 3, 'H': 1, 'I': 1, 'L': 2, 'K': 6, 'M': 1, 'F': 0, 'P': 0, 'S': 0, 'T': 0, 'W': 2, 'Y': 0, 'V': 3
Frequencies of Amino Acids
'A': 10.71%, 'R': 0%, 'N': 7.14%, 'D': 7.14%, 'C': 0%, 'Q': 0%, 'E': 7.14%, 'G': 10.71%, 'H': 3.57%, 'I': 3.57%, 'L': 7.14%, 'K': 21.43%, 'M': 3.57%, 'F': 0%, 'P': 0%, 'S': 0%, 'T': 0%, 'W': 7.14%, 'Y': 0%, 'V': 10.71%
Missing Amino Acid(s)
C, F, P, Q, R, S, T, Y
Most Occurring Amino Acid(s)
K
Less Occurring Amino Acid(s)
H, I, M
Hydrophobic Amino Acid(s) Count
15
Hydrophilic Amino Acid(s) Count
13
Basic Amino Acid(s) Count
4
Acidic Amino Acid(s) Count
7
Modified Amino Acid(s) Count
0
Modified Amino Acid(s) Frequencies
0
Computed by biopython (version 1.79) & proteinAnalysis (version 1)
3 Physicochemical Properties
Sl. No. Properties Values Reference
1. Molecular Mass 3165.7 Da Computed by ProtParam module (biopython 1.79)
2. Aliphatic Index 83.571 Computed by ProtParam module (biopython 1.79)
3. Instability Index (Half Life) 14.775 Computed by ProtParam module (biopython 1.79)
4. Hydrophobicity (GRAVY) -0.664 Computed by ProtParam module (biopython 1.79)
5. Hydrophobic Moment 0.694 Computed by ProtParam module (biopython 1.79)
6. Isoelectric Point 10.116 Computed by ProtParam module (biopython 1.79)
7. Charge (at pH 7) 2.092 Computed by ProtParam module (biopython 1.79)
8. Secondary Structure Fraction 0.286, 0.179, 0.286 [Helix, Turn, Sheet] Computed by ProtParam module (biopython 1.79)
9. Aromaticity 0.071 Computed by ProtParam module (biopython 1.79)
10. Molar Extinction Coefficient (cysteine|cystine) 11000, 11000 Computed by ProtParam module (biopython 1.79)
4 Activity Details
4.1 Target Organism(s)
E.coli (Gram-negative), F.oxysporum, L.monocytogenes (Gram-positive), P.aeruginosa (Gram-negative), P.putida (Gram-negative), R.mucilaginosa (Gram-positive), S.aureus (Gram-positive), S.cerevisiae
4.2 Antimicrobial Activity
Antibiotic, Antimicrobial, Fungicide, Anti-yeast, Anti-gram-negative, Anti-gram-Positive
4.3 Enzymatic Activity
Not found
4.4 Inhibitory Effect
Not found
4.5 Other Biological Activity
Non-hemolytic, Non-ribosomal
Activity data manually curated from Literature and UniProt
5 Database Cross-references
5.1 Literature Database
5.1.1 PubMed
Citation 1: Cologna CT, Cardoso Jdos S, Jourdan E, et al. Peptidomic comparison and characterization of the major components of the venom of the giant ant Dinoponera quadriceps collected in four different areas of Brazil. J Proteomics. 2013;94:413-22. Published 2013 Dec 6. doi:10.1016/j.jprot.2013.10.017
PMID: 24157790
Citation 2: Touchard A, Aili SR, Fox EG, et al. The Biochemical Toxin Arsenal from Ant Venoms. Toxins (Basel). 2016;8(1). Published 2016 Jan 20. doi:10.3390/toxins8010030
PMID: 26805882
5.2 Protein Sequence Databases
UniProt: C0HJH6
5.3 3D Structure Databases
No PDB Ids found
AlphaFoldDB: C0HJH6
5.4 Nucleotide Sequence Databases
No entries found in GenBank or EMBL
CCDS: Not found
RefSeq: Not found
5.5 Protein-Protein Interaction Databases
STRING: Not found
IntAct: Not found
MINT: Not found
DIP: Not found
BioGRID: Not found
5.6 Ligand Databases
BindingDB: Not found
DrugBank: Not found
ChEMBL: Not found
5.7 Family & Domain Databases
InterPro: Not found
PANTHER: Not found
PROSITE: Not found
5.8 Genome Annotation Databases
Ensembl: Not found
KEGG: Not found
5.9 Phylogenomic Databases
GeneTree: Not found
5.10 Enzyme & Pathway Databases
BRENDA: Not found
BioCyc: Not found
5.11 Protein-RNA Interaction Databases
RNAct: Not found




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