AMPDB_28428 | Type IV secretion protein Rhs

PEPTIDE SUMMARY

Type IV secretion protein Rhs

1 General Description

AMPDB ID: AMPDB_28428

Protein Names: Type IV secretion protein Rhs

Protein Family: Colicin pyosin nuclease family

Gene Name: AW118_28105

Source Organism: Escherichia coli

Protein Length: 591 AA

Protein Existence: Inferred from homology

2 Protein Sequence & Composition

2.1 Sequence

RNDQTLKVTNDRTVSVSHDDGLYVRNDRKVTVEGKQEHKTTGNHISLVEGTHSLEVKGDLAEKVSGALGIKVDGDIVLESSSRISLKVGGSFVVVHSGGVDIVGPKINLNGGGSPGTPINTLQPAVMDALADEQYDRGNAGGGNDGEPSDEDESEGGEEDKDDSDELVIPVYAKSCLKEKGCTDAGTTMEPSKHFGDMALFAQPVEDDCCGYGTHYHDDEVEQLAQSAKKTSGANSLTGEMTVASAGVAVPLAAEQSAGVLTRVWGTLGAWGGEGFLSVSKTVPALGVLVSALYPIPAGEGSDKVPGRDEQWLENELRRKAQSGETAATRARFLFQRNTAGELRTYGYHTPAGSELEGVRVALMEWNKEFSRYEFSPVSDSGPKIFWTPAKPEGSEQPIHTGTPVEPVDLPDIYVNPIPDEKTDITTPPSPMPEERNFNDWILVFPDGAELTPIYVYLKTARDEAGTVTGKGEVLAGTGRWLSQAGKSLGVPIPQQVANKLRSKSFNNFDEFRAAFWTAVGECPELLSQFNKANQTLIKRGRAPYTISRQRVGGRGTFEIHHIDEIQYGGEVYDIDNLRVNTPKNHIRLHK

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 42, 'R': 28, 'N': 24, 'D': 39, 'C': 5, 'Q': 19, 'E': 48, 'G': 65, 'H': 14, 'I': 24, 'L': 42, 'K': 32, 'M': 6, 'F': 17, 'P': 35, 'S': 40, 'T': 40, 'W': 8, 'Y': 15, 'V': 48

Frequencies of Amino Acids

'A': 7.11%, 'R': 4.74%, 'N': 4.06%, 'D': 6.6%, 'C': 0.85%, 'Q': 3.21%, 'E': 8.12%, 'G': 11%, 'H': 2.37%, 'I': 4.06%, 'L': 7.11%, 'K': 5.41%, 'M': 1.02%, 'F': 2.88%, 'P': 5.92%, 'S': 6.77%, 'T': 6.77%, 'W': 1.35%, 'Y': 2.54%, 'V': 8.12%

Missing Amino Acid(s)

No Amino Acid(s) are missing in this protein

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

Hydrophobic Amino Acid(s) Count

287

Hydrophilic Amino Acid(s) Count

304

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	63861 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	74.213	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	37.819	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.513	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.701	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	4.766	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	-25.959	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.261, 0.277, 0.234 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.068	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	66350, 66600	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Hydrolase

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

No PMID found

5.2 Protein Sequence Databases

UniProt: A0A854JTJ1

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: A0A854JTJ1

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	NEOL01000121	GenBank \|\| EMBL

CCDS: Not found

RefSeq: Not found

5.5 Protein-Protein Interaction Databases

STRING: Not found

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR037146, IPR044925, IPR003615, IPR003060, IPR016128, IPR036302

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: Not found

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

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