AMPDB_27503 | S-type Pyocin domain-containing protein
PEPTIDE SUMMARY
S-type Pyocin domain-containing protein
1 General Description
AMPDB ID: AMPDB_27503
Protein Names: S-type Pyocin domain-containing protein (EC 3.1.-.-)
Protein Family: Nil
Gene Name: ceaC SAMEA2273372_02182
Source Organism: Enterobacter bugandensis
Protein Length: 521 AA
Protein Existence: Predicted
2 Protein Sequence & Composition
2.1 Sequence
MGYRTENYGRGQAFENDKTTTGARCIASINDSEFDRRIVRVGDMTTPCPKCGEPGRIINGESRVEFFGKAVAMDGSEVSCGCPRGTNRVIAPAGQWMGRGRDPVDIAREEHAARVVAERQAEEKRLAEERDRNRVFAKSCLRGEGCNDAGVDQEPHTNFAAMAFYQAVPPADPASDNDFVQHAQTAKKKKPAEDIPEPKKRSTLYKWWFGNHEEVEYQRAIAAATSAANVQTAVEGASVLGLVGGSAITSGTWAVRGATAVGEIAAAGHGAPLAALLVGMYPGKLNEGEQDFIDRMRLEQMREAPSRVRYTWEQDDKGNPVPHGWHTPPGKDMVRVRKMEWDSSRKVYTFTTEEDPRITIIWTPDSSGVNVPSNTGNQNPVRIPNPVVVDPLPENTSIEATTTPTPEEKNFADYILVLPLPNIPPIYIYLNADHKYHVAPKGNPPLPAFPEAKTAKKRTPVKGGGSLRSRWKDSKGRIYEWDSQHGTVEIYDRSGRNHLGEFDPITGEQTKPADPTRKVEK
FASTA format
2.2 Composition
Counts of Amino Acids
'A': 51, 'R': 40, 'N': 24, 'D': 30, 'C': 7, 'Q': 15, 'E': 41, 'G': 45, 'H': 11, 'I': 24, 'L': 18, 'K': 29, 'M': 10, 'F': 14, 'P': 43, 'S': 24, 'T': 34, 'W': 10, 'Y': 14, 'V': 37
Frequencies of Amino Acids
'A': 9.79%, 'R': 7.68%, 'N': 4.61%, 'D': 5.76%, 'C': 1.34%, 'Q': 2.88%, 'E': 7.87%, 'G': 8.64%, 'H': 2.11%, 'I': 4.61%, 'L': 3.45%, 'K': 5.57%, 'M': 1.92%, 'F': 2.69%, 'P': 8.25%, 'S': 4.61%, 'T': 6.53%, 'W': 1.92%, 'Y': 2.69%, 'V': 7.1%
Missing Amino Acid(s)
No Amino Acid(s) are missing in this protein
Most Occurring Amino Acid(s)
A
Less Occurring Amino Acid(s)
C
Hydrophobic Amino Acid(s) Count
252
Hydrophilic Amino Acid(s) Count
269
Basic Amino Acid(s) Count
71
Acidic Amino Acid(s) Count
80
Modified Amino Acid(s) Count
0
Modified Amino Acid(s) Frequencies
0
Computed by biopython (version 1.79) & proteinAnalysis (version 1)
3 Physicochemical Properties
Sl. No. Properties Values Reference
1. Molecular Mass 57455.4 Da Computed by ProtParam module (biopython 1.79)
2. Aliphatic Index 61.823 Computed by ProtParam module (biopython 1.79)
3. Instability Index (Half Life) 38.742 Computed by ProtParam module (biopython 1.79)
4. Hydrophobicity (GRAVY) -0.712 Computed by ProtParam module (biopython 1.79)
5. Hydrophobic Moment 0.828 Computed by ProtParam module (biopython 1.79)
6. Isoelectric Point 7.09 Computed by ProtParam module (biopython 1.79)
7. Charge (at pH 7) -1.37 Computed by ProtParam module (biopython 1.79)
8. Secondary Structure Fraction 0.225, 0.261, 0.23 [Helix, Turn, Sheet] Computed by ProtParam module (biopython 1.79)
9. Aromaticity 0.073 Computed by ProtParam module (biopython 1.79)
10. Molar Extinction Coefficient (cysteine|cystine) 75860, 76235 Computed by ProtParam module (biopython 1.79)
4 Activity Details
4.1 Target Organism(s)
E.coli (Gram-negative)
4.2 Antimicrobial Activity
Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative
4.3 Enzymatic Activity
Hydrolase
4.4 Inhibitory Effect
Not found
4.5 Other Biological Activity
Non-hemolytic, Non-ribosomal
Activity data manually curated from Literature and UniProt
5 Database Cross-references
5.1 Literature Database
5.1.1 PubMed
No PMID found
5.2 Protein Sequence Databases
UniProt: A0A822WW80
5.3 3D Structure Databases
No PDB Ids found
AlphaFoldDB: A0A822WW80
5.4 Nucleotide Sequence Databases
Sl. no. Accession(s) Access Link(s)
1. FJZI01000004 GenBank || EMBL
CCDS: Not found
5.5 Protein-Protein Interaction Databases
STRING: Not found
IntAct: Not found
MINT: Not found
DIP: Not found
BioGRID: Not found
5.6 Ligand Databases
BindingDB: Not found
DrugBank: Not found
ChEMBL: Not found
5.7 Family & Domain Databases
PANTHER: Not found
PROSITE: Not found
5.8 Genome Annotation Databases
Ensembl: Not found
KEGG: Not found
5.9 Phylogenomic Databases
GeneTree: Not found
5.10 Enzyme & Pathway Databases
BRENDA: Not found
BioCyc: Not found
5.11 Protein-RNA Interaction Databases
RNAct: Not found




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