AMPDB_12670 | Klebicin D activity protein

PEPTIDE SUMMARY

Klebicin D activity protein

1 General Description

AMPDB ID: AMPDB_12670

Protein Names: Klebicin D activity protein

Protein Family: Colicin pyosin nuclease family

Gene Name: DMW43_22795

Source Organism: Serratia marcescens

Protein Length: 718 AA

Protein Existence: Inferred from homology

2 Protein Sequence & Composition

2.1 Sequence

MDTNIPGMGDVHIDGVHGLNPGQDNSTNWEGGNGKGGRDSSSSGDSQGAAIRRQVNAIKNDPKVSNILKELQKKVRAVTAYAKVALKSVEADGKIQVQVGEIRTSDEAAVSRAITSVSQVKNVLGVGLPAQGGIVFAGNIDTNHRIGNYQNVPNGNNNGNNSAAEDKASLATYSEVLNGKIPPGFWLDNNRVMTEITEQYEINGGGKGSDRTGYRQRNVEVPSLTSAYQQFKQVEREVAEEARKAEEARKAEEARKAEAARKAEEVRKAEEARKAEEARKAEEARKAEEARKAEAARKAEEARKIEEARKAEAARKALFAKAGILDAPAYSPEKLKAANAALAAAGAMVLNRAPAMLQTSMVGQGVMTTTSELAGWAASASWRAAYEVGSIRAGTAVAAGSVLGAFALGFYPTEVGAGSDRVPGRDVNLFALQASLAAAGRATIQPGMTSVDLPVRGFVTTDDDGRQSVNFVRTGVGGVSPSVPVFRPVRDELTGLDKITLPAMAGGPARTILINPVPTGPAAPAHTGNGSPGPKSPVHTGTGIRQADSIVVTTFPADVVQDLQDFILWQPDALETGVEAVYVMVRSPRYTPGKVSGKGQQVGDGWLNTAGQELGSPVPSQIADKLRGREFASFDAFRKAFWTEVGKDPELSKQFIPANKKRMSQGLAPRARNKDTVGGRRSFELHHDKLISQDGGVYDMDNLRVLTPKHHIDIHRGK

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 97, 'R': 50, 'N': 34, 'D': 37, 'C': 0, 'Q': 30, 'E': 48, 'G': 74, 'H': 10, 'I': 29, 'L': 39, 'K': 44, 'M': 12, 'F': 18, 'P': 37, 'S': 43, 'T': 37, 'W': 7, 'Y': 12, 'V': 60

Frequencies of Amino Acids

'A': 13.51%, 'R': 6.96%, 'N': 4.74%, 'D': 5.15%, 'C': 0%, 'Q': 4.18%, 'E': 6.69%, 'G': 10.31%, 'H': 1.39%, 'I': 4.04%, 'L': 5.43%, 'K': 6.13%, 'M': 1.67%, 'F': 2.51%, 'P': 5.15%, 'S': 5.99%, 'T': 5.15%, 'W': 0.97%, 'Y': 1.67%, 'V': 8.36%

Missing Amino Acid(s)

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

Hydrophobic Amino Acid(s) Count

373

Hydrophilic Amino Acid(s) Count

345

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

104

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	76340.7 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	74.68	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	39.172	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.477	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.763	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	9.797	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	9.985	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.23, 0.262, 0.273 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.052	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	56380, 56380	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Hydrolase

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

No PMID found

5.2 Protein Sequence Databases

UniProt: A0A2V4FNS7

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: A0A2V4FNS7

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	QJPU01000017	GenBank \|\| EMBL

CCDS: Not found

RefSeq: Not found

5.5 Protein-Protein Interaction Databases

STRING: Not found

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR037146, IPR044925, IPR003615, IPR003060, IPR016128, IPR036302

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: Not found

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

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