AMPDB_11044 | Colicin transporter

PEPTIDE SUMMARY

Colicin transporter

1 General Description

AMPDB ID: AMPDB_11044

Protein Names: Colicin transporter

Protein Family: Colicin pyosin nuclease family

Gene Name: CS537_15070

Source Organism: Yersinia mollaretii

Protein Length: 919 AA

Protein Existence: Inferred from homology

2 Protein Sequence & Composition

2.1 Sequence

MGEGHSNVTGHGSRGPTGGVKGGPTGGSSHNSNRGNGWGTSNTPYGKVHHYSPSQFGNSNRDGGRGGDSQSQNAGHAPSLAQRPDMQAYMAVGGVPAVITLIDGGWGITLSRLSVVAAFVESNLARIGSWAMRTSPIGVVVMGMMPSSIAPDPPMGNYFTTPVLPADRVTDMPKEALKSVDEVAVNVRISDVTQEGVQQAVLIKNPTVTQRVPVVKAVPTATPNVYTAPVPGVTPIHINVVESVEPSHQTQPTVAGKPTATPIENAPVKAVTSPSGRHTHDAIIVFPDTSGIDPLYISMIRIVSAHELREEARSAYDVARSEREAAETAFVQSHPAEALGLKKTWVERQVTEVAAHILLLEKNLALLNQEVAQVQQRRDYILLPENRNTFKHIPELHRLNAAVRTQQSELNTLNQGIAELRAKQATLFVQQQSVNAEIELAEQQRIENERLAAEVAERQRVENERLAAEMAERQRVENEQLAAKVRARQQEAIRQDTYSLPAYPMGSYYPPGFAVAGKGDIALEQEVTQGLVDSLRMALVRLDAVAIDSVIGPMAVTVAAAFNPLKKGAGSSRPLGWDRLPLASTVRLINYLVADPGAAAAVSAVVTAAFNPLREGNGAARPSDWDRPLLAGAIPLHGMWLSHGNWSARSADIELPVRMLITDAHGLMEVHAVKTGVGGVSAKVKLVGAHYDAAKGAYTFTTDNVPPRNFIFTPVTPPGTDNSPVLPQPISAPVTPLHTGEIVIRHAVIHTVFPLPALEGRSFHDYVIWFPADSGLEPVYVYFKNPRYEPGTVTGHGEPVSGTWLAGAGKDLGAPIPAHIADQLRGRRFSSFDTFREAFWEMVGHDPELSGQFIISNRERMRASKAPKARKIDSVDLRTSFEIHHIKFIKDGGEVYNIDNLRVVTPRRHIEIHSKKGGK

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 100, 'R': 60, 'N': 38, 'D': 38, 'C': 0, 'Q': 37, 'E': 54, 'G': 76, 'H': 31, 'I': 48, 'L': 62, 'K': 31, 'M': 19, 'F': 24, 'P': 69, 'S': 59, 'T': 54, 'W': 11, 'Y': 20, 'V': 88

Frequencies of Amino Acids

'A': 10.88%, 'R': 6.53%, 'N': 4.13%, 'D': 4.13%, 'C': 0%, 'Q': 4.03%, 'E': 5.88%, 'G': 8.27%, 'H': 3.37%, 'I': 5.22%, 'L': 6.75%, 'K': 3.37%, 'M': 2.07%, 'F': 2.61%, 'P': 7.51%, 'S': 6.42%, 'T': 5.88%, 'W': 1.2%, 'Y': 2.18%, 'V': 9.58%

Missing Amino Acid(s)

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

Hydrophobic Amino Acid(s) Count

497

Hydrophilic Amino Acid(s) Count

422

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

122

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	99286.6 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	85.332	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	41.15	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.252	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.686	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	7.861	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	1.903	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.275, 0.263, 0.256 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.06	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	90300, 90300	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Hydrolase

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

No PMID found

5.2 Protein Sequence Databases

UniProt: A0A2G4UBN0

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: A0A2G4UBN0

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	PEHO01000012	GenBank \|\| EMBL

CCDS: Not found

RefSeq: Not found

5.5 Protein-Protein Interaction Databases

STRING: Not found

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR024575, IPR037146, IPR044925, IPR003615, IPR016128, IPR036302

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: Not found

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

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