AMPDB_10268 | Toxin

PEPTIDE SUMMARY

Toxin

1 General Description

AMPDB ID: AMPDB_10268

Protein Names: Toxin

Protein Family: Nil

Gene Name: AWC36_06625

Source Organism: Brenneria goodwinii

Protein Length: 352 AA

Protein Existence: Predicted

2 Protein Sequence & Composition

2.1 Sequence

MAFFQAAPAAAPDVPQQAQTGKKNHFAQDLPQLKKRGALYKWWFGNHEEMDYQAALAAATSVARVQTATAGASILEPIVGNIAVRGTWAVRAAGVAVGGVGAPLAGLLVGMMPGRLNDGEQDFIDRMRLEQMREAPTRARFTWENDSHGNPVPHGWHTPPGKDRVRVRKMAWNDTRQAYTFTTEEDNPVTIIWTPDSSGVRVPANTGNQTQPPLPNPVIVDPLPDNTGIESTTSPEPEEKAFADYILILPLPDIPPIYIYLNADHKYYAPPKGIPPLPAYPDAKKAQAKTPVKGGGKLRNRWKDSRGKIYEWDSQHGMVEVYDRSGRNHLGEFNHITGEQTKPSDPTRKVEK

FASTA format

2.2 Composition

Counts of Amino Acids

'A': 38, 'R': 21, 'N': 16, 'D': 21, 'C': 0, 'Q': 16, 'E': 18, 'G': 29, 'H': 9, 'I': 16, 'L': 19, 'K': 20, 'M': 8, 'F': 9, 'P': 36, 'S': 11, 'T': 23, 'W': 9, 'Y': 11, 'V': 22

Frequencies of Amino Acids

'A': 10.8%, 'R': 5.97%, 'N': 4.55%, 'D': 5.97%, 'C': 0%, 'Q': 4.55%, 'E': 5.11%, 'G': 8.24%, 'H': 2.56%, 'I': 4.55%, 'L': 5.4%, 'K': 5.68%, 'M': 2.27%, 'F': 2.56%, 'P': 10.23%, 'S': 3.13%, 'T': 6.53%, 'W': 2.56%, 'Y': 3.13%, 'V': 6.25%

Missing Amino Acid(s)

Most Occurring Amino Acid(s)

Less Occurring Amino Acid(s)

Hydrophobic Amino Acid(s) Count

186

Hydrophilic Amino Acid(s) Count

166

Basic Amino Acid(s) Count

Acidic Amino Acid(s) Count

Modified Amino Acid(s) Count

Modified Amino Acid(s) Frequencies

Computed by biopython (version 1.79) & proteinAnalysis (version 1)

3 Physicochemical Properties

Sl. No.	Properties	Values	Reference
1.	Molecular Mass	38833.9 Da	Computed by ProtParam module (biopython 1.79)
2.	Aliphatic Index	67.699	Computed by ProtParam module (biopython 1.79)
3.	Instability Index (Half Life)	42.173	Computed by ProtParam module (biopython 1.79)
4.	Hydrophobicity (GRAVY)	-0.628	Computed by ProtParam module (biopython 1.79)
5.	Hydrophobic Moment	0.642	Computed by ProtParam module (biopython 1.79)
6.	Isoelectric Point	9.059	Computed by ProtParam module (biopython 1.79)
7.	Charge (at pH 7)	2.842	Computed by ProtParam module (biopython 1.79)
8.	Secondary Structure Fraction	0.244, 0.261, 0.236 [Helix, Turn, Sheet]	Computed by ProtParam module (biopython 1.79)
9.	Aromaticity	0.082	Computed by ProtParam module (biopython 1.79)
10.	Molar Extinction Coefficient (cysteine\|cystine)	65890, 65890	Computed by ProtParam module (biopython 1.79)

4 Activity Details

4.1 Target Organism(s)

E.coli (Gram-negative)

4.2 Antimicrobial Activity

Antibiotic, Antimicrobial, Bacteriocin, Anti-gram-negative

4.3 Enzymatic Activity

Not found

4.4 Inhibitory Effect

Not found

4.5 Other Biological Activity

Non-hemolytic, Non-ribosomal

Activity data manually curated from Literature and UniProt

5 Database Cross-references

5.1 Literature Database

5.1.1 PubMed

No PMID found

5.2 Protein Sequence Databases

UniProt: A0A250BCI0

5.3 3D Structure Databases

No PDB Ids found

AlphaFoldDB: A0A250BCI0

5.4 Nucleotide Sequence Databases

Sl. no.	Accession(s)	Access Link(s)
1.	CP014137	GenBank \|\| EMBL

CCDS: Not found

RefSeq: Not found

5.5 Protein-Protein Interaction Databases

STRING: Not found

IntAct: Not found

MINT: Not found

DIP: Not found

BioGRID: Not found

5.6 Ligand Databases

BindingDB: Not found

DrugBank: Not found

ChEMBL: Not found

5.7 Family & Domain Databases

InterPro: IPR036725, IPR009105, IPR016128, IPR036302

PANTHER: Not found

PROSITE: Not found

5.8 Genome Annotation Databases

Ensembl: Not found

KEGG: bgj:AWC36_06625

5.9 Phylogenomic Databases

GeneTree: Not found

5.10 Enzyme & Pathway Databases

BRENDA: Not found

BioCyc: Not found

5.11 Protein-RNA Interaction Databases

RNAct: Not found

Download