AVR/I/SSAPDB Help

AVR/I/SSAPDB Text Search Facility

This is a generelized search facility. This search facility is case insensitive. Here one can search with followings.

1. AVRI/S/SAPDB ID (e.g., AVR/I/SSAP10)

2. Entry Type (e.g., Clinical or Non-clinical)

3. Peptide Name (e.g., Melittin)

4. Source (e.g., Bee venom)

5. Source Organism (e.g., Apis mellifera)

6. Taxonomy (e.g., Animalia)

7. Validation (e.g., Experimentally validated)

8. Sequence (e.g., GIGAVLKVLTTGLPALISWIKRKRQQ) [Note: This is not a BLAST search]

9. Target Organism (e.g., VISA-9)

10. PubMed ID (e.g., 34087287)

11. UniProt ID (e.g., Q8LW54)

12. PDB ID (e.g., 1BH1)

13. DrugBank ID (e.g., DB10955)

AVR/I/SSAPDB Advanced Search Facility

This is a advanced & specific search facility. This search facility is case insensitive. Click on 'Add Field' to add a search field. In case of 'Range Attributes' integer and float values are expected in search fields. An image of a build search query attached below.

3. Understand Text Format of AVR/I/SSAPDB database

The text format of AVR/I/SSAPDB starts with two-character code followed by 4 blank space characters followed by the data. Each line is kept 90 characters long for better readability of the data. The description of the two-character code is given below.

ID => AVR/I/SSAPDB Accession

ET => Entry type (i.e., if the entry contains a clinical target organism, then it is a clinical entry; otherwise, it is a non-clinical entry.)

PN => Peptide name

PL => Peptide length (please note that any special compound(s)/character(s), if present in sequence, is/are not considered in length)

SR => Source (i.e., from which specific body part(s) of the source organism is the peptide isolated/collected?)

SO => Source organism

TX => Taxonomy

VL => Validation

TO => Target organism

IC => Inhibition concentration

TH => Toxicity & hemolytic activity

XR => Database cross-reference

SQ => Sequence

XX => Blank line

// => End of an entry

Help & Tutorial