AEPDB Help

1. AEPDB Text Search Facility

This is a generelized search facility. This search facility is case insensitive. Here one can search with followings.

1. AEPDB ID (e.g., AEPDB1)

2. Peptide Name (e.g., Tat-Ebo)

3. Source (e.g., Synthetic)

4. Validation (e.g., Experimentally validated)

5. Sequence (e.g., YGRKKRRQRRR) [Note: This is not a BLAST search]

6. Target Organism (e.g., EBO-Z)

7. Target Component (Binding Target) (e.g., Viral membrane)

8. Target Process (e.g., Viral fusion)

9. PubMed ID (e.g., 23962564)

10. UniProt ID (e.g., P03518)

11. PDB ID (e.g., 6EGT)

2. AEPDB Advanced Search Facility

This is a generelized search facility. This search facility is case insensitive. Click on 'Add Field' to add a search field. In case of 'Range Attributes' integer and float values are expected in search fields. An image of a build search query attached below.

3. Understand Text Format of AEPDB database

The text format of AEPDB starts with two-character code followed by 4 blank space characters followed by the data. Each line is kept 90 characters long for better readability of the data. The description of the two-character code is given below.

ID => IAMPDB Accession

PN => Peptide Name

PL => Peptide Length

SO => Source

VL => Validation (i.e., experimentally validated or computationally or any other way)

PT => Peptide Type (i.e., chemically modified or non-modified)

MD => Modification Description (if the peptide is chemically modified)

TO => Target Organism

IC => Inhibition Concentration

BT => Binding Target

TP => Target Process

MN => Mechanism of Action

HA => Hemolytic Aactivity

TC => Toxicity

XR => Database Cross-reference

SQ => Sequence

XX => Blank Line

// => End of an entry

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